RNA id: TCONS_00073425


Basic Information

Item Value
RNA id TCONS_00073425
length 3022
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_037314
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36967294 ~ 36974879 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACAACATCCCTCCTGAGGCTGAAGAAACGCGCAAGAACTCGCAACACTACATTACTAAAAGAAGAGGAGCACGAAACAACTCGAATTCGGTGGACAGACAAACGGTGAATCGTTCTCTTCAAGCAAGATTTTGTTTTTGACCACACTGAATTTTAAAGGAATAGCAATCGGTTTGTTTTGACTCTTCACACATCAGTTAGTCCTGTACCTTGATGATGAGGAGACATTTTCGCGCTTTTTAACTCGAGGACTGACATTTTCGCGACAAGATTTCGCTATTATCAATGCGTTTACCGGACGATACTATGAACTCTTTCTATGAACGTCTCACAAAAATGACCGCGAGCCTAATAATGAACGGACATCTGTCAAAGGAGGTTGCTGGAAGTACAACTCAGTCctgtttatagtttattttaactGTAGGAGTTCATGAACTGATTTGTTTGTTGTATGGACACGATATTTATGAAAATGAGCGTTTCCATCCTCTCTGTAACCTGTTTGATGGCTTGCCTGCTCTCGGTTCAGTGTAGTAGTCTGGGAGCGGAGACCGGCTCCCAGGAGTCTCAGTGTGTGTCTTGTGGACTCGGGCATCAGGAAGATTCGGGGAGAATGGACACAGACTTTCTGGAAGCGGTTAAAAGGCACATATTGAACCGACTGCAGATGAGAGAGAGACCAAATATCACTCATCCCATTCCCAAAGCCGCCATGGTAACGGCGCTGCGCAAACTTCACGCGGGTAAAGTTAGGGAGGACGGCAGGGTTGAGATCCCCAACTTAGATGGACACGCTGCCCACAACGAGGTGCAAGAAGAAACGTCGGAAATCATCAGTTTTGCCGAATCAGATGATGTAACTCCATCCAAGTCCAGCCTCTACTTTCTGATCTCCAACGAGGGGAATCAGAACCTCTACGTGTTGCAGGCAAATCTGTGGCTGTATTTTAAGCTGATGCCAGGTACTCTGGAGAAGGGCCTGCGGCGAAAGGTGACAGTGAGGGTGCACTCCTATGAGCCTGGTGGGCAGAACGTGCACTGGCCCATGATGGAGAAACGTGTTGAATTGAAACGTAGCGGCTGGCACACCTTCCCTGTGTCTGAGGCCATACGGGAAATGTTGGCTAAAGGAGGTCGCCGACAAGACCTCGACATCCACTGCGAGGGTTGCGAGGCCGCCAATGTTCTGCCCATCTTGGTGGACCCAAGTGACCCCTCTCACCGACCCTTCCTGGTAGTCCGGGCACAGCAGGCAGATGGAAAACACCGCATCCGAAAGCGAGGCTTGGAGTGTGACGGCAACAACGGAGGTTTGTGCTGCCGACAGCAGTTTTACATCGACTTCCGGCTCATTGGGTGGAACGACTGGATCATTGCGCCAGCAGGGTACTATGGGAACTACTGTGAGGGCAGCTGCCCTGCTTATATGGCAGGTGTTCCAGGCTCTGCCTCGTCATTTCACACAGCAGTGGTCAACCAGTACCGCATGAGAGGCATGAGTCCCGGATCTGTTAACTCCTGCTGCATACCCACTAAACTCAGCACCATGTCAATGCTCTACTTCGATGACGAGTACAACATCGTCAAACGTGACGTGCCTAACATGATCGTGGAGGAGTGCGGCTGTGCCTGAACAAAATCCATGTTAGGACAGCAGTGACAGTCATATTTATGGTCTTTCTGAACCACATGCATATAGATTGCGTTAATATTTGTGCACTCACAAAGTACAATCACACacgtctgtatgtgtgtgtgtgtgtgtgcatcaagCAGTAGATCATCAGACAGGTGGATATAAAGGCTAGGGATGATAAGGGAAAGGAAACACCAAATGGTTGAACTCTAGTTTGCCATTTCTAGACTTAAAAAAAATGGCTCAAACTTTCTAACAGCGAACTGGTGTCATGCTTTGACATGAGTACTTAGAGACTGTTGTACAAGCACTGACATATCTCAATGTCCCTCCTACTTCAGAACACCAGCACTTCCAACAGCTCATATAAGGCAATATGACAAATCATTCCAGCTGATGTAGAGATTTCTAAATCAGTGCGCATCATCCCAGTCCTTCTCAGAGGCTTTCCCACAGCAATGACTCCAGCTGTCTGCGCTATTGTCAAATAAATAGTGAGGCTTCAACCCAGACTGCAAGCACCTTTGGCCAAGATCATCTTGAAACTAAAACCACTTCCATCGTTCCACTTAACTTAACTGTGGCTGACTGCATAACAAGATCTTGAGGTCTAACCGGTACAGCGCAAAGTTCACCTGCACACTTCAGTGGCTGACAAACGCTTGCAGCGATGTGCGTTCCACAGAGCCTCTTTTACTCTGTCCAGCTGGTTTACAGGGAGTACAGCACTTGCGAAAACTCTCGAAATGCACAATTTAAAGCACTTGCATATTGCAAAGCCTTCAAAAGGGTACAACGAGGTGGACCTACCCTTGCCCATAGTCCTTTTAATATAAAGTGCCGCACGAACTATGCAATGTATAGTAATCCTGAACAATGTCAAACAAACTGAAATCTTCTTTCTGCTTGTCTTTAACTCTGTATCAATACTTGAAATGTGATCTTTCGCTTGCTTTCCAAAGCGGATGATTGTTACGATGTTTGCACTGAAAAGTTGCGGGATTagttaaaagacaaaaaaataaatctgccattgaaaatgttatttttgtagtaaaactgaatatttgtaaacaacaaaaaaaaaattaattgtaccAAAGAGGCCAATATTTTAGCTATTGTAATAAGGTGGCAAGGCCATtccaatatttgtaaaataattgttgATCCTTCTCAAGAGGCCTAATAATCAGGGTACAACATAATGGATTCCATTTATAGCTCTGTCTAATTTTTGTATGCCATGTACAGAAAACCGATGAAACACAATCTTTTCCTTGTCTTTaattttccagtcttctatttaATAAAAGTTATTTCTTAGCTGTTGTCATTTAGTTCAACGGATGTCATCTCTGTACagattatgtaaaataaaa

Function

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005179 hormone activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04550 Signaling pathways regulating pluripotency of stem cells
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-990415-2 Predicted to enable cytokine activity. Predicted to be involved in SMAD protein signal transduction and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in fin; heart; ovary; and testis. Orthologous to human INHBB (inhibin subunit beta B).

Ensembl:

ensembl_id ENSDART00000059753

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075174 lncRNA upstream 34762 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00075173 lncRNA upstream 37102 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00075172 lncRNA upstream 191780 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075171 lncRNA upstream 789873 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075170 lncRNA upstream 864622 35987844 ~ 36102672 (+) True XLOC_037307
TCONS_00075175 lncRNA downstream 16284 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075176 lncRNA downstream 500268 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075177 lncRNA downstream 532080 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075178 lncRNA downstream 1047011 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073443 lncRNA downstream 1183721 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073424 mRNA upstream 10627 36946340 ~ 36956667 (+) True XLOC_037313
TCONS_00073418 mRNA upstream 272296 36314867 ~ 36694998 (+) False XLOC_037309
TCONS_00073419 mRNA upstream 272296 36356740 ~ 36694998 (+) True XLOC_037309
TCONS_00073417 mRNA upstream 1045093 35901554 ~ 35922201 (+) True XLOC_037306
TCONS_00073416 mRNA upstream 1082034 35876927 ~ 35885260 (+) True XLOC_037305
TCONS_00073426 mRNA downstream 166957 37141836 ~ 37296908 (+) False XLOC_037316
TCONS_00073427 mRNA downstream 177685 37152564 ~ 37297485 (+) True XLOC_037316
TCONS_00073429 mRNA downstream 345343 37320222 ~ 37339656 (+) False XLOC_037318
TCONS_00073430 mRNA downstream 354157 37329036 ~ 37334614 (+) True XLOC_037318
TCONS_00073431 mRNA downstream 392094 37366973 ~ 37453128 (+) True XLOC_037319
TCONS_00073423 other upstream 169460 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 169466 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073421 other upstream 169519 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073420 other upstream 171972 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073415 other upstream 1103452 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073428 other downstream 206561 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073432 other downstream 436991 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073437 other downstream 902555 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073445 other downstream 1183919 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 1185567 38160446 ~ 38160572 (+) True XLOC_037330

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU60506 True 7687 lncRNA 0.40 2 CI01000009 4763368 ~ 4771085 (-)
bowfin (Amia calva) TU60506 True 679 lncRNA 0.45 1 CM030125.1 49618277 ~ 49618955 (-)