RNA id: XM_039798426.1


Basic Information

Item Value
RNA id XM_039798426.1
length 1819
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC120557803
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33188068 ~ 33223258 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGCGATCAGACAGAAGTGAAATAACCAGCTGGAGTTTAATAATCTCATTATCCAACAGCAACATAATGAAGAGCTTTCTTCTACTCATCCTCTCACTGATGATAACAGGCTGGGAGGCCTCATCTGAAGTGAAGGGATGCACAGATGGATGGGTGGAATTCATCTGCCAGCATAACCCAACTCATCAATATCAAAGTGTTGATGTAGTTAAGAACAGCCAAACAATCATACGAAGTACTCGAAAGAATGAGTGGCAGACCGAGGGCAGATTTTCTGTTTACTATGATGCAGCAAATAGAAAGCTCAGAGTGGTCATCAAACCACATCAACATGGGGACTCTGGGAAGTACAAGTGTACATTTAAATTTGAAGGAAAATCTGAAAGTGATAAAGTGGACTTGAGAGTTGATAACGGCTGCCAGACACCATTTAATCAAACTGCGTACAGAACAGCTAAAACCACCATCTCATGTAACAAAAGAAACTCCACAGTCATGTTTTTCTGCAAAGAGAACGGTTCAATCTGTGAGGATATTTTATCAACAAAATCTTCTCTGAAGTCAAACGGGTCCTTCACTCTCACAGAGACCAGTAGTAGCTTCAACATGTCCATCAGTAATGTGTCCTCACAGCATGCTGGGGTCTACTGGTGTGGAGTGGAAACAGATAAAGGAAGTAACAGAGCTGCACTCAGAAAAATACAACTGGAGGTTAATGATACTATTACTAGCTTCACTAGGTCTCCAACTGTTGGACAGAATCTCACATACTGGTGTGGATATCCAAAGGGTACTCCGATAAAAAAATTCATCTGTAAAGGAGAAGATCCATCTATATGTAAACAGATAGTAAGCACGCAACAGAGTAACACTGGAAAGTATTTTATGATGGAGGACAAAGAAAGGATAAATAGCACCATAACAGTGAGAAACGTAACAACAGAAGACTCTGGGACATACTGGTGTGGAGCAGAAAGAAATGACCCGAAACAGAGCAACCTATTCTTCCACAAACTTGTGATGACTGTCGGGGCCTCCTCGTTACCTGGAACCATATCTGGGGTCGTCTGTGTGGCTGTGCTGCTGGTGCTGCTCATTTTGGTTCTCGTCTGGAAACGATTTCAGCGttcaaaagacacaaaaaatggAGAACAGAACAATGAGGATGGTGTCTATGAGGAGATACAGGAGCGCCCCCAGAAGCCAGACTCAGGAACTGCACTCAGCACTATTTATGTCACAGCCAACGCTCCCACAAACCCCTCTGCCTCGCAGCATTACTCCACGGTCAACTTTCCCAACAGCTATGGAGAAGCTAGTGGTGACACATATTCTACTGTGTGGGACAGCGGCCATAGTCCCACCCACTCTGCTGTCAATCATCCATCCAGACTTCCTGAAGACCCTTTCTATTCTACTGTCAACAACCCACAGCAGCACTGAGACCAGTCCTGACACTCTTCACTTCAGTTTTTTAATGGGACATTATTTGATCACACCAGGCTTCAGAATTCAGGATTCATGACATTGTTCACTTTGTTTGATTCAAGGTTTAGTCACAGGGCTTCACTGATATACACAAAGTTACCAGCCCTCTAACCAGCACTACAGTTCAATACAACATGTCCAACTACCACCTCAATAAGGACCACACAACTCAATCAACACCTCTGATCTATATTCATTAATAATAAGAAGAGTTAATCCAGGACAGTTGGATTAACAAGAAAGTCATCACAAATGGTACCACTtcttaacctgactccgccagatagattgcttcgcatttgctcggcatatccatctgggaactttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58135 lncRNA downstream 145608 33060944 ~ 33065026 (-) False LOC120557801
XR_005639018.1 lncRNA downstream 148390 33060421 ~ 33062244 (-) True LOC120557801
TU58081 lncRNA downstream 168512 33022345 ~ 33042122 (-) False G43241
TU58083 lncRNA downstream 168512 33032050 ~ 33042122 (-) True G43241
TU57994 lncRNA downstream 338537 32871842 ~ 32872097 (-) True G43173
TU58192 lncRNA upstream 112233 33335491 ~ 33336768 (-) True G43329
TU58194 lncRNA upstream 114099 33337357 ~ 33338295 (-) True G43331
TU58199 lncRNA upstream 117124 33340382 ~ 33344158 (-) True G43334
TU58197 lncRNA upstream 121026 33344284 ~ 33345803 (-) False G43334
TU58276 lncRNA upstream 293640 33516898 ~ 33517368 (-) True G43401
XM_039798422.1 mRNA downstream 25614 33179668 ~ 33185020 (-) True LOC120557798
XM_039798423.1 mRNA downstream 33302 33167170 ~ 33177332 (-) True LOC120557799
XM_039798420.1 mRNA downstream 56795 33106047 ~ 33153839 (-) True LOC120557797
XM_039798421.1 mRNA downstream 56795 33106047 ~ 33153839 (-) False LOC120557797
XM_039798419.1 mRNA downstream 111453 33090519 ~ 33099181 (-) True LOC120557795
XM_039798427.1 mRNA upstream 14786 33238044 ~ 33241472 (-) True LOC120557804
XM_039798477.1 mRNA upstream 127389 33350647 ~ 33351072 (-) True LOC120557841
XM_039797128.1 mRNA upstream 175016 33398274 ~ 33404147 (-) True LOC120557091
XM_039798463.1 mRNA upstream 213229 33436487 ~ 33438800 (-) True LOC120557829
XM_039798457.1 mRNA upstream 215634 33438892 ~ 33440415 (-) True LOC120557824
XR_005639021.1 other downstream 18456 33190754 ~ 33192178 (-) False LOC120557803
TU58177 other downstream 18461 33188068 ~ 33192173 (-) True LOC120557803
XR_005638965.1 other downstream 426798 32750792 ~ 32783836 (-) False podxl2
TU57953 other downstream 463645 32743879 ~ 32746989 (-) False LOC120557401
XR_005639083.1 other downstream 1810502 31400076 ~ 31400132 (-) True LOC120558255
XR_005639023.1 other upstream 688122 33911380 ~ 33953932 (-) False LOC120557811
TU58976 other upstream 2267663 35490921 ~ 35496721 (-) True si:ch73-267c23.10
unassigned_transcript_206 other upstream 2685178 35908436 ~ 35908507 (-) True trnac-gca_4
unassigned_transcript_207 other upstream 2686439 35909697 ~ 35909768 (-) True trnac-gca_5
unassigned_transcript_208 other upstream 2687692 35910950 ~ 35911021 (-) True trnac-gca_6

Expression Profile