RNA id: XM_039797110.1


Basic Information

Item Value
RNA id XM_039797110.1
length 2220
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC120557080
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7116592 ~ 7127707 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCTTTTAAGTCATACAGAAAAGTGAGCGAGGGGCAGAGCACGCGGGCTGAATCCTCGTGCCAGCCAGGCTCGTTTTATGTCCCGCGTCACAAATAATAAAACTGGATATATCACACAAAGAGCTTTCCTTCTGAGTGCTCCAGTCATTTGGGCCCATCTTCAGCTGTGATCGAATTCTTCAGGCTCCAGTTAAACATGTCATCTTCATATGCTGCTGCCATATCAGCCCTTCTTTCAGCCAGCTCTTCCAATCCACCAGCAGAAAGTCCTAAACCTTCCCCCCCGCCCAGCAAGCCTGCCCACTCCGCTCCAGCTATACAGATACATCGTCATTCACCTGAGCCTCTGGGATCCTACGATGAGCAACAGGAGAACCCTGCAGACTATGGCATTGGCGGTTACTACCCTGTAGAGATTGAAGAGATTTTCGTTGACCGTTACCAAGTGGTTAAAAAGTTGGGATGGGGTCACTTCTCTACTGTATGGCTCTGCTGGGATATGGTGAAGGGGCGTTTTGTGGCTCTGAAGGTTGTGAAGAGTGCTCAAACAttcacagagacggcactggatGAGATCAAACTTCTGAAATGTGTAAGGGACAGTGACCCTAAAGATCCAAAACGTGAGAAAATTGTGCACCTCATTGATGACTTCAGGATCACTGGAGTGAATGGAGAGCATGTGTGCATGGTTCTGGAGGTGCTGGGCCACCAGTTGCTGAGGTGGATCATCAAATCCAATTACACTGGCCTCCCCCTACCCTGCGTTAAGAGCATCCTCAGACAGGTTCTGCAGGGTTTAGATTACTTGCACAGTAAATGCAAGATTATCCACACAGACATCAAGCCGGAAAACATCCTCCTGAGAGTGGATGAGGTTTACGTTCAGAACCTGGCGGCCAACACCAAGTTGTGGCAGCTGCCAGTGTCCTCTGCTTTCACCAGCTCCACAGTGAACAGAAGCTCCAGAGAAAAACAGAGTTTGTCCAACTTGTTGGGGAAGCTGACTGGGGTTTTCCACACTCTTGGGGAGTGGTCCAGCAAGGTCTCCAGGAGCCCCATCAAACGACTGACAAGAAAAGACAGGAGTCGACGAGGACAGGAGAGTGCATCTAACTACAGTCAAAAAGACAAACTTCATGTGTCGTTCTCTGATGTCGCTGCTCCTCCTAGCACCCGTAGCTCCACCTGTCACTCTAAGTTCACAGGTCCTAACCTCACGTTAAGGAGGCAGACACTGCTATTGGAGGACGGACTGGGCTCAGCTCCACACAGCCAGAGGGACTCCATCTGCTCGTGGCCAGACCTCAACACAGATGCTCCTGTCTCTGGTATCAGTGACTCGGGTGTACTGCTGGACCTACTGAAGCCCCAGAATGCTGATAAAATCCTCATAAAGATTGCTGACCTGGGCAATGCCTGCTGGGTGCACAAACACTTCACTGAAGACATCCAGACATGTCAGTACCGCTCTGTGGAGGTTCTGATCGGTGCCGACTACGACACACCAGCTGACATCTGGAGCACCGCCTGCATGGCTTTTGAGCTGGCCACAGGGGACTATTTGTTCGATCCCCAATCAGGAGCCACTTTCTCCCGAGAAGAAGATCACATTGCCCACATCATTGAGCTGCTGGGATCCCTTCCATCCCAGTTCGCCCTGTCAGGAAGAAATTCCAAACGATACTTCAACCGTAAAGGACAACTGCGACACATCTCAAAGCTGAAGCCATGGAGCTTGTTTGAGATCCTGCTGGATAAGTATGAGTGGCGGCAGGAGGAAGCCGTGCAGTTCAGCTCATTCCTCCTGACCATGTTGGAGTTAGTGCCAGAGGAAAGAGCCACAGCTGCCCAGTGTCTGCAACACCCCTGGCTCACCTCCTAGATGTACCAGTTCTGTCTTATTCATAGCCCAGTGGACTAGCTCTCTGTTCAGGAACAGGCTGGTACACATTGCACTGGACACGGGAATTGGACAGCTGTGGGATATACAGCAGTAGTCTGATGCTGGCATCAATAAGCACATCTTTCATAGACCATTATTAGCCTAAATAACAGCCTTTACCCAGTTGGGTTGCTTGgtctttaaatgtgttttaatggcAGTCACATCTAATTCAGGCATAGCAATGACCAAAGAGAAGTATTGTCTTACTGAAAAACTGCCTTGATACATGATCATAAAGTTCCTGAATTTTAATAAACTGACATAAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48752 lncRNA downstream 102047 7014311 ~ 7014545 (-) True G36380
TU48749 lncRNA downstream 167785 6948081 ~ 6948807 (-) False LOC120558193
TU48737 lncRNA downstream 240546 6875846 ~ 6876046 (-) True G36366
TU48728 lncRNA downstream 344134 6772238 ~ 6772458 (-) True G36357
TU48727 lncRNA downstream 345083 6771133 ~ 6771509 (-) True G36356
TU48800 lncRNA upstream 1006 7128713 ~ 7129325 (-) True G36423
TU48802 lncRNA upstream 18367 7146074 ~ 7147051 (-) True G36425
TU48804 lncRNA upstream 20284 7147991 ~ 7148691 (-) False mbd1b
TU48914 lncRNA upstream 57472 7185179 ~ 7187208 (-) True G36489
TU48925 lncRNA upstream 144761 7272468 ~ 7272716 (-) True G36499
XM_039799168.1 mRNA downstream 560 7109605 ~ 7116032 (-) True comtb
XM_039797829.1 mRNA downstream 7516 7089276 ~ 7109076 (-) True grm6b
XM_039797827.1 mRNA downstream 34945 7074919 ~ 7081647 (-) False mon1a
XM_039797114.1 mRNA upstream 1644 7129351 ~ 7143644 (-) False ccdc120b
XM_039797113.1 mRNA upstream 1644 7129351 ~ 7143644 (-) True ccdc120b
XM_039799173.1 mRNA upstream 20906 7148613 ~ 7161998 (-) True mbd1b
XM_039798721.1 mRNA upstream 35994 7163701 ~ 7179013 (-) False cxxc1b
XM_039798720.1 mRNA upstream 35994 7163701 ~ 7179013 (-) True cxxc1b
TU48334 other downstream 2204175 4906430 ~ 4912417 (-) True ghrh
TU48231 other downstream 2512107 4604133 ~ 4604485 (-) False LOC120556780
XR_005639069.1 other downstream 2694214 4406456 ~ 4422378 (-) False apobec2a
unassigned_transcript_178 other downstream 3834566 3281955 ~ 3282026 (-) True trnae-cuc_1
TU47713 other downstream 4163485 2887992 ~ 2953107 (-) True G35647
unassigned_transcript_181 other upstream 1252045 8379752 ~ 8379824 (-) True trnaf-gaa
unassigned_transcript_182 other upstream 1255576 8383283 ~ 8383355 (-) True trnaf-gaa_1
TU49387 other upstream 1285019 8412726 ~ 8414933 (-) True LOC120557774
TU49462 other upstream 1491387 8619094 ~ 8622685 (-) False mustn1b
unassigned_transcript_184 other upstream 1505106 8632813 ~ 8632885 (-) True trnar-acg_9

Expression Profile