RNA id: TCONS_00073919


Basic Information

Item Value
RNA id TCONS_00073919
length 2561
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_037646
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9180620 ~ 9228941 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCTGTAATCGGACCTCCGGCTCTCAAGTTTCTCTCCATCTGATAGTCAGGGTAAACCATGCCAGCAGTACCATCTAGTTCAGAATCAGTTGGCACTGGCCCCGTCTGCCCACATGCTGCCAAAATGCTCTCAAATGCTGCAAATGGAGAGTCTGGCATCAACGGGGATGCTGACGATGTCTTCAACGGAAAGGCTGGACACAAGCTGAATGAAACAAACGGGCGCCACTTGAAGAGTCTGAACGGACAGCACATGGACAAGGGCTCCGAGGTCAGCATGGAGAGGAAATGGATTCGACCGGATTTGCCCAGCAGATGCACTTGGAAGCTTGGTGACCTGAATATGGAGTCACCCCACAACCACTACCAACGGACAAAGACGTCCGGTATCCTCCCCAACATCTTAAGCAAGATTGGAGAGACCCCAATGGTTCGCATGAACAAGATTCCCAAAGCTTTTGGCCTCAAGTGTGAACTCTtgGCTAAATGCGAGTTCTTCAATGCTGGTGGCAGTGTGAAGGACAGAATCAGCTTGCGAATGATAGAAGATGCTGAACGTGATGGCACCCTTAAACCTGGAGACACCATCATTGAGCCTACATCAGGAAACACAGGTATCGGTCTTGCTCTGGCAGCAGCGGTCAAAGGTTATCGCTGCATTATTGTCATGCCTGAAAAGATGAGCATGGAAAAGGTGGATGTGCTCCGTGCTCTGGGTGCTGAGATTGTTCGTACCCCAACCTCAGCCCGCTTCGACTCTCCTGAGTCTCATGTGGGGGTCGCGTGGCGTTTGAAGAATGAGATTCCTAATGCTCACATTCTTGACCAGTACCGCAATCCCAGTAACCCCCTGGCCCACTATGACACCACTGCAGAGGAGATCCTGGAGCAGTGTGGCGGTAAAATAGACATGCTGGTGGCAGGAGCTGGCACTGGTGGCACCATCACTGGCATCGCTCGCAAGCTAAAGGAGAAATGCCCTGATATCAAGaTCATTGGAGTGGATCCGGAGGGCTCTATTCTAGCTGAGCCAGACGAGTTGAATAAGACAGATAAGACTCAGTATGAGGTTGAAGGCATCGGGTATGATTTCATCCCCACTGTTCTGGACAGATCTGTGGTGGATAATTGGTACAAGTCCAATGATGAGGAGTCCTTCGCCATGTCTCGTATGCTCATCAGAGAGGAGGGTCTTCTGTGCGGTGGTAGTTCTGGCACAGCCATGTCTGCAGCAGTCAACGTAGCCAAAGAGCTGAAGGAAGGCCAGCGCTGTGTTGTCATTCTACCCGACTCCATCCGCAACTACATGTCTAAATTCCTCAGTGACAAGTGGATGTTTGAAAAAGGCTTCATGAGCGAGGAGGATCTTGTTGTCAATAAGCCATGGTGGTGGAATTTGACTCTTCAGGAGCTTCGCCTCTCGGCTCCACTGACGGTGCTTCCCTTGGTTTCCATCAAGAAGACCATTCAGATCCTCAAAGAAAAGGCTTTTGACCAGGCTCCTGTGGTGGATGAGGCGGGGCATATTCTGGGGATGGTCACGTTGGGGAACATGCTCGCGTCTGTTCTGGCTGGCAAGGTCAGACCATCCGATCCCATAAGCAAAGTGCTCTACAAACAGTTTAAACAGGTGCGTCTGACTGATAACCTTGGCAAACTCTCACGTATCCTTGAGACGGATCATTTCGCCCTTGTTGTGCACGAACAGATTCAGTACATGAGTGACGGATCCCCCAAGATGAGGCAGATGGTGTTCGGGGTGGTGACGGCCATTGACCTGCTCAACTACGTGACCATGCGTGAACGAAGGGAACGCACGCTGTCTGAGTGCTCGTTGTCAGAAGATCAGTGAACAACCTGATCACAATTCTGGAGCAAACTATTTTTCCatcttaattttgtatttttcttttgtagcTTATTTCTCTGCAAGTGGCACGCTCCATTTCAAGAACTATGCTTTTTATATATGAGCCTGTCAGTAGCTTTACATGTCATTCGACTGATCTGTAGTCTGTGTTCACTGgatccatttttaaaaaatcttcagTCTCTAATATTTAGCTTTTGTTCAGTTTAGGTGCTTTATTAGTCATGATGAAGTAATCTTACAGGTCAATCAGCTCGCATTTGCAGATGTGTTTACGTTGcagatttgattttgattaaggTGTATATATTTACATGAATCTATTTTATTCTTTGAAAAACTCAGTAGGCTATGCGGTTTGGTAGGATTGGGTTTGGTTTAGGTGAAGTGCTTTATTCAGGTGATCTCTTGAATGCAGCGCCGTCTAGTGGCAGCGGCAGTTTACAGCAGGCGTGGACACTTTACTTTCTTCAATCATGCTCTTCTAAGCACAACGATCCCTCTGCTACACGTGGAGAGCTTTACAGGCATGACTGGTCATGATTGACAAAGCAAACAATTCGTGTGTTTGGGAAACCAAACTACACCCAGATGGGGTGACTTGGtatttttcttgtattaaaaCAAGACATGATTTTGAGTGTAAATAAGTGACGGTGGTTTGAAATTACTTTAAACGCACCACACTTG

Function

GO:

id name namespace
GO:0003401 axis elongation biological_process
GO:0070814 hydrogen sulfide biosynthetic process biological_process
GO:0050666 regulation of homocysteine metabolic process biological_process
GO:0050667 homocysteine metabolic process biological_process
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0019344 cysteine biosynthetic process biological_process
GO:0019346 transsulfuration biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021030-3 Predicted to enable cystathionine beta-synthase activity. Acts upstream of or within axis elongation and regulation of homocysteine metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; germ ring; immature eye; musculature system; and nervous system. Human ortholog(s) of this gene implicated in coronary artery disease; homocystinuria; hyperhomocysteinemia; malaria; and neural tube defect. Orthologous to human CBS (cystathionine beta-synthase).

Ensembl:

ensembl_id ENSDART00000121665

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075297 lncRNA downstream 133322 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00073916 lncRNA downstream 159568 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073924 lncRNA upstream 57478 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00073923 lncRNA upstream 57478 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073922 lncRNA upstream 57478 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073926 lncRNA upstream 126431 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00074962 lncRNA upstream 1139439 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073914 mRNA downstream 204369 8974276 ~ 8979468 (-) True XLOC_037643
TCONS_00073913 mRNA downstream 204683 8973080 ~ 8979154 (-) False XLOC_037643
TCONS_00073911 mRNA downstream 288594 8887528 ~ 8895243 (-) False XLOC_037642
TCONS_00073912 mRNA downstream 288707 8887989 ~ 8895130 (-) True XLOC_037642
TCONS_00073910 mRNA downstream 522401 8635438 ~ 8661436 (-) True XLOC_037641
TCONS_00073920 mRNA upstream 1505 9230446 ~ 9242777 (-) True XLOC_037647
TCONS_00073921 mRNA upstream 22525 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073925 mRNA upstream 93483 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073927 mRNA upstream 182068 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073928 mRNA upstream 186719 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073901 other downstream 1528536 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1644814 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2466036 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 2774566 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4736733 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 514618 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 541394 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1616977 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2319831 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2322663 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU200503 True 2913 lncRNA 0.45 15 CI01000037 3988708 ~ 4010044 (+)
tiger barb (Puntius tetrazona) TU200503 True 463 lncRNA 0.41 5 NC_056718.1 2990313 ~ 2994664 (+)