RNA id: TCONS_00073928


Basic Information

Item Value
RNA id TCONS_00073928
length 928
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_037653
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9415660 ~ 9419704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAAGTCAGCATTTTCATGTGGGAGAAGAGTATGaaatgataagaaaaaaaaaatggaggagTGTTCAACAGCGTCACTCTGCTGAGGGAAACAAAAGGAGGAGAACTCAGACAAGGGAAAGAGAGAATGAGTAAAGACTGATAGAAGAAAAACATGTGAAAACTGGTCTTCGGTAACGTCAGAGTAAATTGGTTGGTCAGAGAAAGAATACGTGACATTTGAGGGCTTCTAAAATGCTACTTTGATAGTAATTTTTTGGTATTTGAAAGTGCACAGAACCTAAAAGGATAGAGaaaaagtaatcatttaaaagagAGTGAAGGGAGGATGGCAAACAACAGGACATTGACGGTCATCGTGCTCCTAAGCATCTTTATGGCAAGAAGTCACGCAAAGGGAAATCAACAAAATGAAACACAGAATAAAGCTTCTTTGATGGAAAAACTGACAGatttcAAAGAGCAGATGTTTTTGGAGGGCAGCGATGTCACTTTATGGTGCGGCAATGTCACTAATTTTAAATGGGATGATTTAGTTTTTGTTGTGTGGAACATCAGCACACAAAGCAAGAAATGTTATATTGGATTGTCCCCCACACTGGACGACACCTGTAAAGATGGAAAGAGTATGCACAATTCTACAGATGGAGTTTCTTTATCAATTTCCAAAATTTCAATGCAAGATGAAGGAGTTTACACCTGTGATTTATCATATAAAGGAGGAAGCTATAGTTTAAACATTTCTGTCAGTGttttccaTCTTTCCGCCCAACTGGACCCAGACAAAAAAACTGCTGTCTGTACGGCcagatataaaaataaagcacCCACTCTTCACTGGGAACCTGCTTCCAGTGTTTTGCCCAATAATGACGGGGAGAATGGTGCGTCTTTTACTATTGAGAATCGAGTGTATCTGAAAGAAA

Function

GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0019815 B cell receptor complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-213 Predicted to be involved in B cell differentiation and B cell receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of B cell receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human CD200R1 (CD200 receptor 1) and CD200R1L (CD200 receptor 1 like).

Ensembl:

ensembl_id ENSDART00000138996

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 44794 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 126590 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 126600 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 126621 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 365145 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 948676 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 2135372 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 2137502 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 2151608 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 2151608 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073927 mRNA downstream 660 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073925 mRNA downstream 67602 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073921 mRNA downstream 133141 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073920 mRNA downstream 172883 9230446 ~ 9242777 (-) True XLOC_037647
TCONS_00073919 mRNA downstream 186719 9183837 ~ 9228941 (-) True XLOC_037646
TCONS_00073929 mRNA upstream 158039 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073930 mRNA upstream 256222 9675926 ~ 9705512 (-) False XLOC_037655
TCONS_00073931 mRNA upstream 259794 9679498 ~ 9689367 (-) False XLOC_037655
TCONS_00073932 mRNA upstream 259794 9679498 ~ 9696978 (-) True XLOC_037655
TCONS_00073933 mRNA upstream 299521 9719225 ~ 9732212 (-) True XLOC_037656
TCONS_00073901 other downstream 1760359 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1876637 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2697859 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 3006389 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4968556 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 323855 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 350631 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1426214 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2129068 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2131900 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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