RNA id: TCONS_00073920


Basic Information

Item Value
RNA id TCONS_00073920
length 1004
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_037647
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9230446 ~ 9242777 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGTAGTTTGACCCTCCATCTTCAGCGGCCCCTGCTCTTGATCCTCcggcagaagaaaaaaaacccaCCGCCTTTCTTCTTTCAAAATGGCCGAATACTTGGCGTCTATTTTCGGTACAGAAAAAGACAAGGTCAACTGCTCTTTCTACTTTAAAATTGGAGCCTGTCGCCATGGAGACCGATGCTCTAGACTTCATAATAAACCCACCTTCAGTCAGACCATTGCCCTGTTGAACATCTACAGGAACCCACAAAACACAGCCCAGTCTGCTGATGGCTTAAATGCTGTCAGTGATGTGGAGATGCAGGAACATTATGATGAGTTCTTTGAGGAGGTCTTCACTGAAATGGAGGAGAAATATGGAGAGGTTGAGGAGATGAACGTCTGCGATAATTTAGGAGATCACTTGGTGGGAAATGTCTATGTGAAGttcCGCCGTGAAGAAGATGCAGAGAAAGCGGTGATTAACCTGAACAACCGCTGGTTTAATGGGCAGCCCATTCATGCGGAGCTCTCACCTGTCACTGACTTCAGAGAGGCCTGTTGTCGACAGTATGAGATGGGAGAGTGCACTCGAGGAGGCTTCTGCAATTTCATGCATCTGAAGCCAATCTCAAGGGAACTAAGGAGAGAGCTGTACGGCCGCAGAAGGAAGAGACATCGGTCCCGCTCTCGCTCCCGTGAACGACGCTCTCGCTCTAGGGAACGCAATAGAGGAGgtggtggtggaggaggaggCGGTGGTGGTGGCGGCGGCGGCGGTGgtggtggtggaggaggaggaagagaccGAGAGAGACGGCGGTCAAGAGATAGAGAGCGTTCTGGAAGATTTTAAAATTTCCTTCTTTCTTGAAATCAACATTCAGTCACCAGACCCTTCAGCTCTCTCCTGATGAAATGTGATAACTGTTGAAATTGTTTCCTTCTTAATTGTCCTCTGATCTTTTTATTCAACGTTTGTTTGcttttcaataaaaaaacacCTTAGTCGTTTCACA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0089701 U2AF complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030628 pre-mRNA 3'-splice site binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05131 Shigellosis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-020419-1 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1).

Ensembl:

ensembl_id ENSDART00000021191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075297 lncRNA downstream 179931 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00073916 lncRNA downstream 206177 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073924 lncRNA upstream 43642 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00073923 lncRNA upstream 43642 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073922 lncRNA upstream 43642 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073926 lncRNA upstream 112595 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00074962 lncRNA upstream 1125603 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073919 mRNA downstream 1505 9183837 ~ 9228941 (-) True XLOC_037646
TCONS_00073917 mRNA downstream 4466 9180620 ~ 9225980 (-) False XLOC_037646
TCONS_00073918 mRNA downstream 20615 9183561 ~ 9209831 (-) False XLOC_037646
TCONS_00073914 mRNA downstream 250978 8974276 ~ 8979468 (-) True XLOC_037643
TCONS_00073913 mRNA downstream 251292 8973080 ~ 8979154 (-) False XLOC_037643
TCONS_00073921 mRNA upstream 8689 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073925 mRNA upstream 79647 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073927 mRNA upstream 168232 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073928 mRNA upstream 172883 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073929 mRNA upstream 334966 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073901 other downstream 1575145 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1691423 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2512645 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 2821175 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4783342 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 500782 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 527558 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1603141 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2305995 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2308827 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_04011298_04017585.mRNA True 944 mRNA 0.46 8 CI01000037 4011152 ~ 4017684 (-)
bowfin (Amia calva) AMCG00014741 True 1956 mRNA 0.46 8 CM030128.1 29383488 ~ 29398221 (+)