RNA id: TU69738



Basic Information


Item Value
RNA id TU69738
length 1000
RNA type TUCP
GC content 0.40
exon number 2
gene id G52226
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22529606 ~ 22530708 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACAGAGTGTGAagcaatgttttattttctgtgtacAAGTACAacttgttaaaaaagaaataaaatcttATACATTCCATATTCTTGCCAAAACTAGAAAAAAAGGGTCTCATGACTATCACTTGAGGCAGGTATCATAAGTAGTAGACATTAGCAAGAAGGGTACAGCATACTTTTCATCTATAGACAATTAAAACTACCATCCACACAACactttaaaatatcaaaatggtGCAAATTGCTCAGAGAAGTCAGAATTGAGCACTCCCATTAAATCATAGGTAAAGGGAAAATTAACAATCATGTTTAAAGAACTATGGCCACTGGAGTGTAATAAATGCAAAACTAGATGGCCACAGATTAACCACAAGATCATTAGACGGATTAAAGATGCATCACATCTGGGATGCTTACATATTAGAACTGGAGCAACAAACCATGTGCCGCAGAGAGCAAAGTGTACATGTCCTCAATTCCAAACAGACTGTAGCAGGTGATTTCACATGTTAGCTCCTCTCTGGTTGAAAGAGTGCTTGTCAGTTAAAATCACCAGCTGTAGTCTGACTGCAatttaaaaccccaaaacacTGGGCCCTCCATTGTGCATGGTGGACATCCCGGATCTTGATCACAGCTACTTATGAAGAGGTTTCAATACCGACAGAAGGGTCAAAACACAGCCATGTGTTCTTCTGGGGCCAATTTAAATAAAGACCCCATTCAGTGGATCGAGTCACTGACAATAAAGAATGAAAAAGCTCAGGAACCATGCTCTTCAGAAACCATACTCATCAGATGGATAAAAAGGAAAGCCAAAGTCGTCATCGTCATCGTCATCGTCGTCACCGATAAGGGTCATGGCTATGAAAAGATTAAGCAGATCTACACCATCGTAGTCTTCATCTTCTGTATCATCGGAAATGAACTGCGACGTGCATGTTTGTCATGCCGATAAAGGCACTCCGTTTTGAAAGGGCAGCATCTGTATCGGGTATAGTAA

Function


GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69697 lncRNA downstream 62075 22467071 ~ 22467531 (-) True G52197
TU69609 lncRNA downstream 201728 22327655 ~ 22327878 (-) True G52137
TU69607 lncRNA downstream 225812 22303165 ~ 22303794 (-) True G52135
TU69593 lncRNA downstream 263553 22243811 ~ 22266053 (-) True G52124
TU69597 lncRNA downstream 280886 22248137 ~ 22248720 (-) True G52128
TU69746 lncRNA upstream 4844 22535552 ~ 22538147 (-) True G52231
TU69748 lncRNA upstream 4844 22535552 ~ 22538147 (-) False G52231
TU69751 lncRNA upstream 8731 22539439 ~ 22541999 (-) True G52232
TU69752 lncRNA upstream 12617 22543325 ~ 22543913 (-) True G52233
TU69753 lncRNA upstream 13326 22544034 ~ 22545473 (-) True G52234
XM_039801209.1 mRNA downstream 26755 22495620 ~ 22502851 (-) True LOC120559491
XM_039801208.1 mRNA downstream 27107 22495620 ~ 22502499 (-) False LOC120559491
XM_039801207.1 mRNA downstream 27109 22495620 ~ 22502497 (-) False LOC120559491
XM_039800177.1 mRNA downstream 36674 22483283 ~ 22492932 (-) True LOC120558868
XM_039800176.1 mRNA downstream 47722 22471680 ~ 22481884 (-) True LOC120558867
XM_039800105.1 mRNA upstream 15210 22545918 ~ 22554730 (-) True inavaa
XM_039799299.1 mRNA upstream 25585 22556293 ~ 22560326 (-) True zgc:195245
XM_039801393.1 mRNA upstream 51366 22582074 ~ 22584094 (-) True c5h1orf194
XM_039801071.1 mRNA upstream 96568 22627276 ~ 22631134 (-) True lhfpl5b
XM_039801525.1 mRNA upstream 215386 22746094 ~ 22750778 (-) True dclre1b
XR_005639375.1 other downstream 300185 22223149 ~ 22229421 (-) False LOC120559880
XR_005639356.1 other downstream 514563 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639338.1 other downstream 1330563 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 1577088 20920699 ~ 20952518 (-) False LOC120558386
XR_005639228.1 other upstream 683390 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 683390 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU70089 other upstream 777792 23308500 ~ 23319684 (-) True G52501
TU70430 other upstream 1804441 24335149 ~ 24339456 (-) False masp2
TU70611 other upstream 2219732 24750440 ~ 24753087 (-) False phactr3a

Expression Profile