RNA id: XM_039799961.1


Basic Information

Item Value
RNA id XM_039799961.1
length 928
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120558756
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28435512 ~ 28439028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCTGCGCATGTGCAGTACGACGAGGCCAGGTTTCCCTGCTGATTTCTACTCCGAGAGACCTAGATCTCCTCAGCAAACTGGTCTCCTCTGACAACTCCAGTGAACAGCTGAGTGGAGATGTTCACAAGCTAGCTGTTCTAAAGGTGTGTACCTGGTGTGCTGCGTGGTCAGGGGCATGAACCTGAAGTCTGGGAACGCACTCAAACGGTTCCTGGTGGCTCAGACATAGCTTCATGACGACTTGTGTGGTAAAAGGACCATCGCAACCATTGCAACTCATGATGTGCAGCTTCTCAAAGCTCCTCTGATGTATGATGTCAAACCACCTACCCAGCTGAAGgttgtgTCGCTGGGTCGGAAGGAGATGACAGCCGTCGAGCTGATAAGACACCTTCAGCTGGAGGCGGAGGAGCTGAGGAAGCAGAAGAAGACGCAGAATGTCACTGGCCTCCACAAataCCTGCAGCTTCTGCAGGGAAAAGAAATGTATCCCTGCCTAGTGGATGCAGAGGGACATGTGATCTCATTCCCACCTATTACCAACAGTGAGAAAACCAagATCAAGAAGTCTACCAAAGAGTTGTTCTTGGAGGTGACGAGTGTCATTTCAGATCTCCACAATGTCATTCTTACTAGTACAAATGACGTCACGTTTCCCATTCATGTGTACGGGGCTTTCAATTTCAAACCCACAACGTCATTCTTCCAATTGTAGGATTATTTTGTTAAGAGTATAGTATAAGGCCTCAGATTTCAGACCAGCAGGACCCAAGTTGCCAAAACCAACAGGCTCCACAATGGCCCCAACCCTAATGAGGCTGCCCAATAAACCCTGCAGCCCCACAAATTGGTCTTGGAGGTCCAaagttccatccatccatccatcttcttccgcttatccggtgtcgggtcgcggggggagcagc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71905 lncRNA downstream 12144 28343661 ~ 28423368 (-) True G53799
TU71923 lncRNA downstream 59100 28376075 ~ 28376412 (-) True G53806
TU71852 lncRNA downstream 113307 28321726 ~ 28322205 (-) True G53768
TU71811 lncRNA downstream 236794 28198452 ~ 28198718 (-) True G53736
TU71786 lncRNA downstream 252505 28173388 ~ 28183007 (-) False LOC120559779
TU71913 lncRNA upstream 187 28439215 ~ 28448206 (-) True G53800
TU71974 lncRNA upstream 169241 28608269 ~ 28608574 (-) True G53851
TU72004 lncRNA upstream 482403 28921431 ~ 28921641 (-) True G53881
TU72009 lncRNA upstream 525615 28964643 ~ 28968075 (-) True G53886
TU72015 lncRNA upstream 532313 28971341 ~ 28972318 (-) False ajap1
XM_039799960.1 mRNA downstream 33663 28400147 ~ 28401849 (-) True LOC120558755
XM_039801189.1 mRNA downstream 116004 28313069 ~ 28319508 (-) True LOC120559481
XM_039801789.1 mRNA downstream 248985 28153182 ~ 28186527 (-) False LOC120559779
XM_039799954.1 mRNA upstream 15880 28454908 ~ 28458571 (-) True LOC120558751
XM_039800882.1 mRNA upstream 61545 28500573 ~ 28502905 (-) True b3gnt7l
XM_039800118.1 mRNA upstream 71873 28510901 ~ 28517962 (-) True dffb
XM_039800119.1 mRNA upstream 72113 28511141 ~ 28517962 (-) False dffb
XM_039801884.1 mRNA upstream 532258 28971286 ~ 29029321 (-) True ajap1
XR_005639350.1 other downstream 774866 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 1236685 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 1245315 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 1264345 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1036981 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1322046 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1322046 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 1532168 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 1532168 29971196 ~ 30072699 (-) False tafa5l

Expression Profile