RNA id: XM_039799960.1


Basic Information

Item Value
RNA id XM_039799960.1
length 833
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC120558755
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28400147 ~ 28401849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccTCTGACCTGAGTGATTGCTCCAAGCTGAAGGAGATTCACTTCAAAGGCAACAAGTTGAACGACAAACGTCTGGAAAAAATGGTCAACGGCTGCCAGACCAAGTCCATCCTCGACTGcctcagaggaagaggaagaggaagatagGGAGAGGACGGAGGTGAAGCGGACGGGGGTCGCAAGGCAGACAAGGGGAAAAGGCAGCAGAGGAAAAAGAAGGAGAAGGTGGCAGACGGACAGGACGAGGTGGAGGAACTGAACAAGATGGTAGTGAGGGTTCTCCATGTCTCGGACTCTCCTGCAGCTCTCACCGTCACAGTGAGTGCTGAGGTGAAAGATGTTCGACCATACCTGGTGTGCTGCGTGGTCAGGGGCATGAACCTGAAGTCTGGGAACGCACTCAAACGGTTCCTGGTGGCTCAGACAAAGCTTCATGACGACTTGTGTGGTAAAAGGACCATCGCAACCATTGCAACTCATGATGTGCAGCTTCTCAAAGCTCCCCTGATGTATGATGTCAAACCACCTACCCAGCTGAAGGTTGTGTCGCTGGGTCGGAAGGATATGACGGCCGTCGAGCTGATAAGACACCTTCAGCTGGAGGCGGAGGAGCTGAGGAAGCAGAAGAAGAGGCAGAATGTCACTGGCCTCCACAAAATCGTGAGGAGGCGGGGTCAGATGGGGAAGGGGAAGGCCCACAAAAGCCGGGGGCCAGCAGCGAGACCTCCAGCCAACTGATCGTTCAGCAGGTCCGCACAGTAGACCAGGACGGCAACCTGAAGGTCGTCTACCCGTCGAAGACAGACCTCTCCAATGACATCAGCAACTTGACAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71923 lncRNA downstream 23735 28376075 ~ 28376412 (-) True G53806
TU71852 lncRNA downstream 77942 28321726 ~ 28322205 (-) True G53768
TU71811 lncRNA downstream 201429 28198452 ~ 28198718 (-) True G53736
TU71786 lncRNA downstream 217140 28173388 ~ 28183007 (-) False LOC120559779
TU71739 lncRNA downstream 552874 27845811 ~ 27847273 (-) False LOC120558759
TU71912 lncRNA upstream 17729 28419578 ~ 28448206 (-) False G53800
TU71907 lncRNA upstream 20010 28421859 ~ 28441652 (-) False G53800
TU71908 lncRNA upstream 20010 28421859 ~ 28441652 (-) False G53800
TU71909 lncRNA upstream 20010 28421859 ~ 28448206 (-) False G53800
TU71910 lncRNA upstream 20010 28421859 ~ 28448206 (-) False G53800
XM_039801189.1 mRNA downstream 80639 28313069 ~ 28319508 (-) True LOC120559481
XM_039801793.1 mRNA downstream 213620 28153182 ~ 28186527 (-) False LOC120559779
XM_039801789.1 mRNA downstream 213620 28153182 ~ 28186527 (-) False LOC120559779
XM_039801791.1 mRNA downstream 217302 28153182 ~ 28182845 (-) False LOC120559779
XM_039801790.1 mRNA downstream 220250 28153182 ~ 28179897 (-) True LOC120559779
XM_039799961.1 mRNA upstream 33663 28435512 ~ 28439028 (-) True LOC120558756
XM_039799954.1 mRNA upstream 53059 28454908 ~ 28458571 (-) True LOC120558751
XM_039800882.1 mRNA upstream 98724 28500573 ~ 28502905 (-) True b3gnt7l
XM_039800118.1 mRNA upstream 109052 28510901 ~ 28517962 (-) True dffb
XM_039800119.1 mRNA upstream 109292 28511141 ~ 28517962 (-) False dffb
XR_005639350.1 other downstream 739501 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 1201320 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 1209950 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 1228980 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1074160 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1359225 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1359225 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 1569347 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 1569347 29971196 ~ 30072699 (-) False tafa5l

Expression Profile