RNA id: XM_039801790.1


Basic Information

Item Value
RNA id XM_039801790.1
length 2688
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC120559779
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28153182 ~ 28186527 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTCTTGTCCCTGCGGctttggatgtttttgtcaGCCCTCGGAGGACAGCGGAGACAGGCGTTGCTAGGCTAGTATCTGTACACTGGACTTGAATGAATGGAACAGTCACATTGGTCACAAAATTGCTTCTCTCGACAAAGCTAAAGAAACAACCTGAACTCAGAAGTCACGTCAGCTGTCCATGTGCTCTCTGTGAGTCAAACAGCAGATTTGCTGGTGTCGTTCTTCTGTGGTCAAACCATCTGCAAAGAAAACGGCATCATACTTTGGGACATTCCCTGGATATTGAAAGAATATTGTGCTGTTGCCGTAGTGACTCTCCAGAGGGACCTCGATTGACAGGTCTCCCTCCAGAGGAACTCTGAGGGGTCGCCACCGAAAGGAACATGTGCTAGAAGTTATACATCTGTCCTAAACGACTGGTCGGCTTTGACTCTAGAAGATGAACAATGAGGATGAATTCTACGATGCCGTCACAGGCCTGGATTCGGACGAGTCGTATGAAGGGGTGTCGGAGGCCAGTTACAAAGATGCGGTGGTGTTTGATGGCAGCAGTCAGAAGAACAACGGATCGGTGCCACAGGAGAATGGCATCAAGAAACACAGGACGTCATTACCTGCGGTCATGTTTTCTAGAAACACTATCAGTGTCTGGAGCATCCTGAAGAAATGCATCGGACTGGAACTCTCTAAGATCACAATGCCCATCGTCTTCAACGAGCCTCTGAGCTTCCTGCAGAGAATTACAGAATACATGGAACACACTTACCTCATCAACAGAGCCTGCTCGCTGTCCAACTCCATAGAACGCAtgcagGCAGTAGCAGCTTTTGCTGTGTCAGCAGTTGCGTCTCAGTGGGACAGAACTGGGAAACCCTTTAACCCTCTGCTGGGAGAGACCTATGAACtcaccagGGAGGATCAGGGTTTCCGGCTGGTGTCGGAGCAGGTATCCCATCATCCCCCAGTCAGTGCCTTCCATGCAGAGAGTCTGGTCGGGGACTTTGTCTTCCACGGTTCCATCTACCCCAAACTCAAGTTCTGGGGAAAGAGCGTCGAGGCTGAGCCTAAAGGAACCATCACACTAGAGCTACTCAAgCACAACGAGGGGTACACATGGAGTAACCCTTTCTGCTGTGTACACAATATCATCCTTGGCAAACTATGGATAGAGCAGTATGGCACAGTGGAAATAGTCAACCACAGCACTGGAGACAAGTGTGTGTTGAATTTCAAGCCCTGTGGCATGTTTGGCAAAGAGCTTCACAAAGTGGAGGGATACATCCAGGATAAGAGtAAAAAGAAGCACTGTGTAATCTATGGAAAGTGGACCGAGTGCATGTGGAGTGTCGACCCTCAGGCCTATGAGGCCCACAAGAAgtcagagaggaaaggagacaaCAGGAAGCACAAAAATgaggagcaggagggagCAGAGAACGATGACGCAGACGACATGCCCGACGTCCAGGAGACGGTTTCTGTTGTACCAGGAAGCACTTTGCTGTGGCGGATAGAATCCAGACCAGCACACTCTGCTGTgATGTACAACTTCACCAACTTTACAATGTCTCTCAATGAGCTGGAGCCTGGCATGGAGGCTATCTTGCCCCACACAGACTGTCGCTTCAGGCCTGACATCAGAGCCATGGAGAATGGCAACATGGATGAGGCCACtaaggagaaggagagactgGAGGAGAAACAGAGAGCTGCCAGAAAGGAGAGAGCCAAGGATGAGGATGAGTGGTCCACTAGGAACAGCCATGTAAACAGAACAGATGAACAGTCAAGGTGGTTCCAGATGGGCACCAACCCATACACCAACTCCCAGGGCTGGCTTTACACCGGTGGCTACTTCAATAGGAACTACCAGGACCTACCTGATATCTACTGATAGCCCGCTAgccttcatcctcctcctcttcctcctctagaACCTGCAATGACCTGCCTGTCAAGACATGGAGAGAAATGTTAAGACCTACCCTGCCCGTCTTCATCTCACTGccttcatcatcatcctcatcctgATCTTTAAAGTGACCAATACACACCCAGCGCAAATTGGAAAGACTTAAAAAGAGTCCAGATGCCCGTCACTTCTCTCAAACAGCGGCCTGCTTGATGTCGATGGAGTCTTCAGGCCTTCACTTCAGTTTTGTTCTCACCATGTGTGATTTTGTCACATAACGATCAGCAAACGTTTCCCATCTCTCTGCCCCGGCATTGTTTAGAGCACAAAAATCATTTTATTCCTGACCGAACGCGGCGGCAGAGAGGTGGTACGTGTGAAACGACCGTTAACGGCCGACTAACTCACAGATCCAATCTGAATGTTTTATGTCTTTACCAATCAAACTCTCTCCTCCGAGAACCCACCTGCCAAGCCTCTGGACGGCGACATTTAAAGCATGTCAAATGTGTCATTAATGAGTAAAATATGAGTAGAAACATGAAGTAAAACATAATAATCACATAGATGGATGTGTGGACATGGACGGACATCCAGTCAACATGGAAATCAGGGAAGCGAATGCTCCTTTGACTGAAGATGAATCTTGAGgaagtggttttttttttttttttcgtcttctttttttaaacactcaaaaaataaatataggtGACATTGTACTCTTTAAGGAACAAAGTTATAAAGAAATACTGTTGCTCAAGATAAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71739 lncRNA downstream 305909 27845811 ~ 27847273 (-) False LOC120558759
TU71737 lncRNA downstream 398988 27728828 ~ 27754194 (-) True G53671
TU71730 lncRNA downstream 428970 27719317 ~ 27724212 (-) True G53665
TU71686 lncRNA downstream 452678 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 488070 27664038 ~ 27665112 (-) True G53621
TU71811 lncRNA upstream 18555 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 141829 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 163764 28343661 ~ 28423368 (-) True G53799
TU71917 lncRNA upstream 185599 28365496 ~ 28441652 (-) False G53800
TU71914 lncRNA upstream 185925 28365822 ~ 28441652 (-) False G53800
XM_039799963.1 mRNA downstream 222667 27845264 ~ 27930515 (-) False LOC120558759
XM_039799964.1 mRNA downstream 222710 27845264 ~ 27930472 (-) False LOC120558759
XM_039799962.1 mRNA downstream 222710 27845264 ~ 27930472 (-) True LOC120558759
XM_039799967.1 mRNA downstream 267044 27845264 ~ 27886138 (-) False LOC120558759
XM_039799966.1 mRNA downstream 269834 27845264 ~ 27883348 (-) False LOC120558759
XM_039801189.1 mRNA upstream 133172 28313069 ~ 28319508 (-) True LOC120559481
XM_039799960.1 mRNA upstream 220250 28400147 ~ 28401849 (-) True LOC120558755
XM_039799961.1 mRNA upstream 255615 28435512 ~ 28439028 (-) True LOC120558756
XM_039799954.1 mRNA upstream 275011 28454908 ~ 28458571 (-) True LOC120558751
XM_039800882.1 mRNA upstream 320676 28500573 ~ 28502905 (-) True b3gnt7l
XR_005639350.1 other downstream 492536 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 954355 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 962985 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 982015 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1296112 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1581177 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1581177 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 1791299 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 1791299 29971196 ~ 30072699 (-) False tafa5l

Expression Profile