RNA id: XM_039801189.1


Basic Information

Item Value
RNA id XM_039801189.1
length 3506
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC120559481
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28313069 ~ 28319508 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGCCTCCGTGCCTCCCCCTCCACTCCTGCTTCGCAGCAGCAGGTTGTCAGCTTTCCCTGTAGGAGCTGTGGGATGCTGCTGAACACACCCTTTGCATTTCGCTGTCTTTTCACATCAGTGTTAACCTATTTTATGCAGTCTATGGTGTTAACTAGCAGCTGAAGAACATTCAAACCTTCACTAAATATGTGGCGTAGTACCGGCTGACTGCATCTGCTTGAGGTTACTGTGATGGCCGGGTCAAAGATGTCTGTGCCACTGGCTGTAGTGGTGGTCCTCTCAGTGCTGCTGACAGGGGCAACCCATGCTGGGCCTGAGATGGATCCATACAAAATCTTAGGAGTAACCAGGAGTGCAAGCCAGGCTGAGATCAAGAAGGTTTATAAGCGTCTTGCAAAAGAATGGCAtcctgacaaaaacaaaaatccaggtGCCGAGGACATGTTTATCAAGATTACCAAATCTTATGAGATCCTTTCCAGTGAAGACAAACGTGCCAATTATGACCGTTATGGGCAGACTGATGACACCCAGCCATACGGCAATGGTCGCTATGGTCAGCACCAGGACACCTTTAACTTCGACGAGTCCTTCTACAACTTTCCCTTCAACAGCAAGACCCATAGGGACTTTGCTGACAGCAAGTACACGTTGCACTTTAAGCAGTATGTCAATGACGTGGTGCCTGACAGCTCCAAGAGACCATACCTGATAAAGATCACCTCTGACTGGTGCTTCAGCTGCATCCACATCGAGCCTGTATGGAAAGAGGTGGTGGAGGAGATGGAGACTCTAGGTGTCGGGATAGGTGTGGTGGATGTTGGCAATGAGAGACGATTAGCAAATCACCTCGGTGCTCATCGCACCCCATCAATACTCGGAGTCCTAAATGGCAAAGTGACGTTTTTCCATTACGCTGTAGCAAAGGAGCACCTGAGACAGTTTGTAGAAGACCTTCTTCCTCAGAGACTTGTGGAATGGGTCACCGACAAGAATGACCTgcacttcttgaacagctggCATGAGCTCAACAAGCCACACGTGCTTCTGTTTGACCAAGTGCCTGTAGTTCCTCTGCTTTACAAACTGACAGCTTTTGCTTATAAGGACTACTTGCAGTTTGGCTATGTGGACCAGGGCCTTTCAGAGACCGCTAATCTGCAGAAACAGTTCAATATTAACACTTACGCTCCAACTATGTTGATCTTCAAAGAGAGCATTGACAAGCCTGCTGACATTATACAGGCTAAAGGAATGAAAAAGCAAATTATCGATGAGTTCATGTCAAACAACAAATTCCTCCTTGTGCCACGGCTGGTCAATCAGAAGCTCTTTGATGAGCTCTGTCCTGTCAAACAGTTCCATAGACGCAGAAAATACTGTGTCCTGCTGATGACAGGTGACGAAGAGTCCTTTTCTCTCGGGAACCAGGCATTTCTTTCATTTGCCTCTGCCAATACCAAGGAAGTTGTGAGATTTGCTTATGTGTACCAACGGCTCCAGCAACCTCTTTGTGACACTCTCATGCAGAACAAGGACAGTGCACCGCCACCAGCACAGgtggTGATCCTGGAGAGGCGGAACGCTGCAGGGAAGGCCTTGTTCAAGCCAGTGACCACCTGGAACGGCAGTGAGGAAGACAAGCAGTGTCTTCTGGAGGAGCTGGAGCGACTTCAGAAAGACCCGTCCATCCTCGTCCATGACGCCATGCTGCCCGAACTTAACAACGAGTTTGCCTCTATGTTTGTAATCCGATGGGTCTATGCATTTTACGATTACCTCTCTGAAGTCATCGATGATATTCTGCATAACAACTGGCGTGAGATGATGCCTCTTCTGTCCCTCATCTTCTCTGCCTTGTTCATCTTGTTTGGAACCGTGGTTATCCAGGCCTTCAGGTCGGTTGCTTAACCCATACATTCTAGACCATCAAAACTctgattaaaaaaaaaaaaaaaaaaaacattttgtgacTAAAATTGATTATCGCCCAAGAAGAATTTTGTGGAGGTTACGGAGCTGACAGATATCACTTACATGAGCAACCTGGTGAAGCTGAGGCCGGGACACATTAACATAGTGCTGGTGCTCACTGACGCCTCCAAGAACATCCTCCTTAGCAAGTTTGCCAAAGAGGTGTACTCCTTCACCGGGAGCCTGACGCTGCACTTCTCCTTCCTGAATATTGACAAGCACGGTGAGTGGATGAACACACTGCTGGAATATGCCCAGGACGCCATGCAGATCGGTGCAGATGAGGGTGACGCGGGAAACCACGAGATGGACTACACCGGCTACGTGCTGGCTCTTAACGGCCACAAAAAGTACCTTTGTCTGTTTAAGCCCGTCTACACCGGCGAAGACCTTGACAGTAAGTCATCTGAGGATGAAGGGGGCACTTCAGGGGGGAGGTCGAGGTCCAGTTCACGTGACGACCACCCGCCGCGCAGATCCAACCGTTGCCGCAGCTTATCCACCCTGCAGATCCACCACAAACTGGACCGTCTAGGGTTGTGGATGGAAAGGCTCATGGAAGGCACTTTGCCTCGCTACTACATCCCTACGTGGCCAGGACTTGACAAAATCACCCCCAGTAAATAGATTAAGGCGCGTTCTGCTGAAGTTAGGCTAgagctgcctttttttttttgcacttgatGTAATAGTTACAGATTGGGTTAATATAACAAACTTGGCTTTAGTGCAACTACTGTGGGACAGGTCCATTAGTGCACCCCTCTTTACACTCATCGCATGCTGTTGTCAACTGTTGGTAGTCATATTTTATTCAggctaatgctgctgctgctgcagccttGTGAACAGAATGAAAAATCACTGTGGCCATTTGGTCTTCAGTAATAAATACTGTGAGTGGAGATGCATGTCTCTTAACACTAAAATGTCTTGCGTTTTCATGCATCTCCGCCCATTGTCTTTCAGTGATGGATGACCTCCTGAATGCTGACTTGCTTGCGCAGTGTAGCGCACTGCTGTAATGACAAAGCCTTGGTCTATTTAATAACCTCAGTTAGCCAGTAGCTTTATGTAGCAATTTCATGTTCTGAATGTTTCCCAAATGGCCCCGATTGACTGATACATTATCATTTTGTCACCTTGAATTACGTAGACATGAAAGTGAAGTCAAACGTACTGTGTGCTCGcttggtttatttatttgttttgtcaaCATTGAGCGTACAAACCTCATGGATAGAATTTTGTGGGTACAATGTGGTGTAAATATTGTACATAATCATGTTATCTATAGGACCTGTATTTTAAAGAGTATGTATCTTGAAAGATAAGGTGAATGTTTTACATGGATTTATCAAAATGCTgtagttatgtttttttttttctagttttccttaagattttcttttacaagttattgtaaaaaaaaagaaaaaaagatgtctGCTAATGTCAGATGTTTCAGTTGGTCTTCAGTAGTGCATATATCCTCTTGGTGGTTGTAATAAAATGCTTTATGTTTATTAA

Function

GO: NA

KEGG:

id description
K09536 DNAJC16; DnaJ homolog subfamily C member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71811 lncRNA downstream 114351 28198452 ~ 28198718 (-) True G53736
TU71786 lncRNA downstream 130062 28173388 ~ 28183007 (-) False LOC120559779
TU71739 lncRNA downstream 465796 27845811 ~ 27847273 (-) False LOC120558759
TU71737 lncRNA downstream 558875 27728828 ~ 27754194 (-) True G53671
TU71730 lncRNA downstream 588857 27719317 ~ 27724212 (-) True G53665
TU71852 lncRNA upstream 2218 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 24153 28343661 ~ 28423368 (-) True G53799
TU71917 lncRNA upstream 45988 28365496 ~ 28441652 (-) False G53800
TU71914 lncRNA upstream 46314 28365822 ~ 28441652 (-) False G53800
TU71923 lncRNA upstream 56567 28376075 ~ 28376412 (-) True G53806
XM_039801793.1 mRNA downstream 126542 28153182 ~ 28186527 (-) False LOC120559779
XM_039801789.1 mRNA downstream 126542 28153182 ~ 28186527 (-) False LOC120559779
XM_039801791.1 mRNA downstream 130224 28153182 ~ 28182845 (-) False LOC120559779
XM_039801790.1 mRNA downstream 133172 28153182 ~ 28179897 (-) True LOC120559779
XM_039801792.1 mRNA downstream 136312 28153182 ~ 28176757 (-) False LOC120559779
XM_039799960.1 mRNA upstream 80639 28400147 ~ 28401849 (-) True LOC120558755
XM_039799961.1 mRNA upstream 116004 28435512 ~ 28439028 (-) True LOC120558756
XM_039799954.1 mRNA upstream 135400 28454908 ~ 28458571 (-) True LOC120558751
XM_039800882.1 mRNA upstream 181065 28500573 ~ 28502905 (-) True b3gnt7l
XM_039800118.1 mRNA upstream 191393 28510901 ~ 28517962 (-) True dffb
XR_005639350.1 other downstream 652423 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 1114242 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 1122872 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 1141902 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1156501 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1441566 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1441566 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 1651688 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 1651688 29971196 ~ 30072699 (-) False tafa5l

Expression Profile