RNA id: TU71730


Basic Information

Item Value
RNA id TU71730
length 1674
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G53665
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27719317 ~ 27724212 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTACTTGCATATTGGTGAGACTAATGGGCCTTTTTTCACAACAGGAAAAGCGccggtgttactaataacattaaccaTGGCTCTGTTTTAGTGTCCTAGTAAGCTGTGACAGTGAGCtaacatgcacaataccaggaccctgaaactgaagaaGCTAAATGGAGTTtagccatcattcattttattatttacacctgtgcttttctttcTGTTGACTATAGCATGGTTTTACCAGAACTCAGGCAGAGGATGCTAGAGAGCTGAAGTTCAGCAGATGGGTCTTTTGAACTGAAGACATTAGTATCATTTGTGATGGAGTCCACAATGTAATGGATGTTTTTGACAATATGCAACATTTGAAGGCCAAAGTTGACATATATTCCCTTTTGTCTGAAATTTCATTTAGATATTATGATTCTCAACTAACTACTGAAAAAAATTACCAAATACATATGTCTCAGACCTTTCTGCTGCCACCCCAATACAATAAAGGTGAATGGAATTCTATCTGTGGTGCTCATTGAAAAATTACAGCAACATATCTTTCCAAAAAACATGTTCCAGTTACCTTGGATAATGTACACACCTCACTGTCAACATTTTTCATTGGATCTACTTACTActgaaaaaataatctttgtGAAATCTGTTGAcagcatgttttatgtttgtttcctttctttttctttttttggtaaGATGGCCCTTTAACCCAACACATCTACTTAACAGAAAGAAAAACTACAATAAGTACAATAGGCCTtcaatttacaaaataattTCCACATAACAAAAGACTGACaaagtaaatgtaaaaacataatgtgcaaagacaaaaaaaacttcagtGCAGGTTTCACATGTATCTGTGGCTGATTTGACATGACAATAAGTCTAGTCTATCTAGTTTGTCACATCTCCTTTCTCTTAAACGTTTTAAATACAGCCTGTAGaatctgaaaaaaagtgacaagtgTGTGTATGACTACTGTCTCTTGGCACATTCAGTGATAGGTTTGGAGTTTCGAACTCTTGAGAGCTGTCCTTTTTTTCTCTACAAAGCAGCACGCCTGCAGCTAGCAGggattcagtgtcttgctcaagggcacttcaGGAGGGCTCATATTGCAGTTGTAGCCCAGACCTTCCAGGTGAAGAGGCTGGTTTGTTCACATTTTAAGGTTCCAAGCATAGACTTCCAGCCACCAGCAACAGTAGAACAGTCAGGTTTGGGGCACTCAGTGGCTTGTTTCCACCGTCTGTAGTTACTTCCAGTAAAGGCGTTGGACTTCCAGTACCTGGTGAACTGCTTCCTCTTAACTCAATCACAGAGGCACCTTTTGTTCTAAAAGCTGTTGTAGAAGCTATCGTTGAAGTGGTTGTAGTCCCGATTACATCTCCAGCATTCTCTTTTACTGTACCCGCAACAGACGCTCCGTCTTGGGGGGACTGCTGGTCCGAGACATCCCCGTCTGCAGTTTTGTACCACTGGCACTGGAAGTCCTTCTTCCAGATCTCAGCTGGGTCTGGTTCAGCGGGTTTAGTGTTTGTGTCTGGCTGATCTGTGGCTTTTGCTGCCTCTGCCTTTTCAGTCACCTTCTCCACCACTTCGGATGGGGGTGGGAGGTGGAGGTATGCAGAGCTTTCTGAATTTTGACGGACGCATCTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71686 lncRNA downstream 18813 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 54205 27664038 ~ 27665112 (-) True G53621
TU71678 lncRNA downstream 74722 27644176 ~ 27644595 (-) True G53619
TU71665 lncRNA downstream 123992 27559421 ~ 27595325 (-) True G53608
TU71575 lncRNA downstream 413751 27302502 ~ 27305566 (-) False LOC120558937
TU71737 lncRNA upstream 4616 27728828 ~ 27754194 (-) True G53671
TU71739 lncRNA upstream 121599 27845811 ~ 27847273 (-) False LOC120558759
TU71786 lncRNA upstream 449176 28173388 ~ 28183007 (-) False LOC120559779
TU71811 lncRNA upstream 474240 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 597514 28321726 ~ 28322205 (-) True G53768
XM_039801615.1 mRNA downstream 58671 27644783 ~ 27660646 (-) True xpc
XM_039801616.1 mRNA downstream 58671 27646702 ~ 27660646 (-) False xpc
XM_039800046.1 mRNA downstream 75322 27628180 ~ 27643995 (-) True arih2
XM_039800045.1 mRNA downstream 97147 27604238 ~ 27622170 (-) True impdh2
XM_039800992.1 mRNA downstream 132816 27576174 ~ 27586501 (-) True dalrd3
XM_039800523.1 mRNA upstream 300 27724512 ~ 27733526 (-) False borcs6
XM_039800522.1 mRNA upstream 300 27724512 ~ 27733503 (-) False borcs6
XM_039800524.1 mRNA upstream 300 27724512 ~ 27733424 (-) True borcs6
XM_039801752.1 mRNA upstream 17627 27741839 ~ 27804126 (-) False sema3h
XM_039801751.1 mRNA upstream 17627 27741839 ~ 27804126 (-) True sema3h
XR_005639350.1 other downstream 58671 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 520490 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 529120 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 548150 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1751797 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 2036862 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 2036862 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2246984 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2246984 29971196 ~ 30072699 (-) False tafa5l

Expression Profile