RNA id: XM_039801751.1


Basic Information

Item Value
RNA id XM_039801751.1
length 3944
RNA type mRNA
GC content 0.51
exon number 21
gene id sema3h
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27741839 ~ 27804126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATAGTGTCTATGGTCTTACCTATGTGGTGCTttaatataatacatccatggtgtgGTGTGAAGGAATCTATAATATTATGGGCGACCTGTAGCTTACCCAGTAGAGTGTGTGCCCCATGTACGCTGAGTCCTTAGCAGCGGCTGGGGGTTCGAGTCCGATCCACGGCCCTTTGCTCTCCCTCCCTTCATGTCTTCACATTTGGAGATGTGATGCACATGGTGACTTGAGCAACAGGAGccccttttgttttgttggccATAGATCCAACTGCCTGAAAAAAATCTGCATGCAGAGGTTTTCCCGGAGCAGTGAATGGGCGTGCAtgcctgcatttgtgtgtgtgcaggctgGCCACAATGATCTGGGATCTTGATCcctcccagagagagagagagaggagagagagagagagagagagagagagagagagagagcagtcaCATGCGGAGAGGAGCTGGGACGAGAGACAGAACAGAAGAGAGTTGTCAAGCTGCGAGGAGGCAGCGgaGGAGGATGTGTTCGTTTGTGACAGCGGTCCTGCTAGCCCACCTCGGGGCTACCTTAACGGGGGCATGGAGAGCATCTCAGCCAAGACTGCAGTTCACACACTCCGAGCTGATCCAGAATGGCCGCCTGCTGACGCTGCCCCTGGTTGCTGGAGACCTGCACTCCCTGCAGCCTGACGAAGACAGGAGGCGTCTGTATGTGGCCATGAAAGATAACCTGCTGTCTACCAGTCTGGACGACATAACTCAGAACCCACGCAAGCTGTACTGGCCAGCTAGTCCAGACCGTGTCCAAGAATGTCTCATGGCTGGGAAGGATCCAGAGtTGGAGTGTGCTAACTTCCTGCGAGTTCTGCAGCCTTTTAATCAGACTCACCTGTACGTTTGTGGCACTGGAGCCTTCAACCCCCGATGTGCTTTCATAGCTACCAGCGTCTTCCAACAGTCGGAGCACCAGACTCTCTCCTACAGCCAGACAGAGTGTGGGAAAGGGAAATGTCCCTACGATCCGTTCCAGAAAACAGCCTCCGCTGTCGTTGACGGAGAGCTGTATGCTGGGATCACCTCAGACTTCATGAGCCGGGACTCAGCCTTCTTCCGTAGTCTCGGCAGCCGTCATGTTATCCGCACTGAGCAGTACGACTCCACCTGGCTGCAGGatgCCCAGTTTGTGCGGGTAGCGCCACTGTCTGAAACTGATAACTCAGAGGACGATAAGGTCTACGTGTTCTTCACTGAGCGAGctcaggaggcagaaggggCTGCTGGGAAGGTGCTCTACTCCAGAGTGGCACGCGTGTGCAAGAATGACATTGGAGGCCAGAGGAGTTTAGTCAATAAGTGGAGTACCTTCCAGAAGGCTCGTATGGTGTGTTCAGTCCCAGGACCAGACGGCCTACAGACACACTTCGACCAGCTGCAAGACATCTTTATCCTCCAGgcgaaagacaaaaagaacccTCTCATCTACGGCGTGTTTACCACCTCTAGCGATATCCTGAATGGTTCAGCAGTGTGCGTTTACCGAATGGAGGATGTGGTTCGGGCTTTCAAGGGAAACTTCCTTCATAAGGAGGGGCCTCAGTATAAGTGGGCAGAGTTTACAGGCAAGGTGCCCTACCCGCGACCAGGAACTtgtccCAGCAGCACATATGGAAGTTACAGCTCGACCAGAGAGTATCCTGACGACGTCATCTTTTTCAGCAGGACTCACCCGCTGCTGCAGGAAAACGTGCTGCCGCTGGGAGAGCGCCCCCTCCTGGTCAGAGTGGGTGTTCACTACAAGTTCAGCAAACTGCTGGTGGACAGAGTGGAGGCCGTGGACGGCACCTACGACGTCCTGTTTATCGGCACAGACTCAGGCCTGGTGCTGAAGGCCATCCATCTGCCCAGAGAACACGGTCAGAGTCAGGAGGTCACTCTGGAGCAGCTGCAGGTCTTTcagCACAAATCACCTGTGACAGCCATGACACTCTCAAAGAAAAAGcAGTGGTTGTTTGTGGGCTCCAGGGAGGGTGTGTCCCAGCTGGCCCTGTACCAGTGTGAGCTGTACGGCCAGGCCTGTGCTGAGTGCTGCCTGGCCAGGGACCCATACTGCACCTGGGACGGACACGCCTGCAGCCCCTTCATGCCCACCGTACGCAGAAGGAATGCTCGTCACTTAGGGGAGGATGAGGATCCGCTAACTCAGTGTGTCAGACAGGGAGCCGggctgcaggtggaggcggaGCAGAGGATGATGATGGTTGCCGAGGGCAACAGCACCTACCTGGAGTGTCTGCCACGATCCAGACACGCTGCTGTTACCTGGTACAAACAGGCTGGAGAGAACAGTCCGGAACTAaaccagtTGGCAACAGGTGACCAGCTGGTAGTGATTGAGCGGGGCGTCCTGATTCGTCAAGCTGAGCTGTCTCACGCCGGCGTCTACCACTGCCAGGTGGAAGAGCACGGCTACCACTGGACCGCCGTCACTGTCCGCCTCGCCGTCTGGAGCCCCTCAGCCAATCGCCTCCTCGCTTCCTGGTCCACCTCGTCTTATCAGAGCGCAGGGACCCAGCCGTGGTACGAGGACGTGATGGCGCTGATTCACCCTGGAAACCTCGGCCAGCATTGCCGGGCGCTAGGTTACCGCCCCCCACGCAACCACCGTCGCCACAGTGACATCCTGGTGAAGCCGAacaaggagaaagagaagggggAGAGGCACAAGCacgggggaggaagaggaggaggaggaggaggtggaggtggtgggGGAGGAAGAGCAGCGGGGAGGAAGAGCAGGAGCAAGCCGCAGCAAAGGGCACCGAGGAGCGCTTGAATGTGTCGCTGAACAGGAGGGCGGATTTTCagtgacataaacacacacacacacacacacacacacttatgatAACATCCACactaagacacacacatgtacacacacttaACTTatacactgagacacacacatactgtatgtacagagACTTTGATATGCGCATGCACttatctacaaaaaaaaaaaggaatcctTTCATTATAGTGACAAACTTTCAAACTAagctacacacaaacaaactgaagTATGTACAGGAGGACAAAAGACTTgtgaataaaaaggaaaaagtagAACCTTAGGCTGCGTAGCATGTTGAATGAAGGATGAACCGCACACCCAGATCACTCAGTGTAACTGAGTCTGTGTTGTGACAAGGACATGGCAGAGCATGTTTTGGATTTGGAGCCtctacagagaagaaaaaaTTCCAATAGTAGATATTCAGCATTTGAAAAATCATCCAACCCCTCTGAACTGAGTGCTGCTTTTAAGGACCATACTGGTGGCTTGATTATAAATCACATACACACTGCCAATTATTCTCCAAAGCAGATGTGTTTAGATTGATTTCGTACCTTCCAGGCAGATGCTGGTTTTTATTAAATTCTGTATGCTTTGAAAAGCATCTCACAGAAACATGAAAGACGCTTGAGATTTCGAATATGTTTCTCAAAGTTATGGTATTGCAGTTGCAAGCAGCATTTtccaaacaaaatgtttaaatgttctcTGTGATGTAGGTGTTTTTTGGAAAACAATaagcagtgatagttaattaaaGGGTTTTGAGAAGGTAATTATTAACTGTAGGTTGTGAATATCAGTAAATAGCACTGTATTATAGTAGCAATGTATTATGCATCTTTTCCCCCGAAATGGAAATATACCAACAGTTCACTTTCAGGGAGAGTTCTACTGGTGTCTTCAGATAGGTGGGGTCTTACTGCGAAATGACTGACCGTGACCGCAAAGATGAAAGGCAGAGAAAAGCAGGGCGACAGCTTTGATGAGGTTACAGATCAACTTTCCCAGGACGTAGaagctgtacacacacacacacacacacacacacacaaaaccaacacacacatacacacacacacacact

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71730 lncRNA downstream 17627 27719317 ~ 27724212 (-) True G53665
TU71686 lncRNA downstream 41335 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 76727 27664038 ~ 27665112 (-) True G53621
TU71678 lncRNA downstream 97244 27644176 ~ 27644595 (-) True G53619
TU71665 lncRNA downstream 146514 27559421 ~ 27595325 (-) True G53608
TU71739 lncRNA upstream 41685 27845811 ~ 27847273 (-) False LOC120558759
TU71786 lncRNA upstream 369262 28173388 ~ 28183007 (-) False LOC120559779
TU71811 lncRNA upstream 394326 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 517600 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 539535 28343661 ~ 28423368 (-) True G53799
XM_039800523.1 mRNA downstream 8313 27724512 ~ 27733526 (-) False borcs6
XM_039800522.1 mRNA downstream 8336 27724512 ~ 27733503 (-) False borcs6
XM_039800524.1 mRNA downstream 8415 27724512 ~ 27733424 (-) True borcs6
XM_039801615.1 mRNA downstream 81193 27644783 ~ 27660646 (-) True xpc
XM_039801616.1 mRNA downstream 81193 27646702 ~ 27660646 (-) False xpc
XM_039800791.1 mRNA upstream 10023 27814149 ~ 27829550 (-) True rhoab
XM_039800944.1 mRNA upstream 29592 27833718 ~ 27842985 (-) True tmem115
XM_039799963.1 mRNA upstream 41138 27845264 ~ 27930515 (-) False LOC120558759
XM_039799964.1 mRNA upstream 41138 27845264 ~ 27930472 (-) False LOC120558759
XM_039799962.1 mRNA upstream 41138 27845264 ~ 27930472 (-) True LOC120558759
XR_005639350.1 other downstream 81193 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 543012 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 551642 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 570672 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1671883 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1956948 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1956948 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2167070 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2167070 29971196 ~ 30072699 (-) False tafa5l

Expression Profile