rhoab (LOC107099133,LOC104942029,LOC100707445,LOC102225527,LOC103154003,LOC108233110)


Basic Information

Item Value
gene id rhoab
gene name LOC107099133,LOC104942029,LOC100707445,LOC102225527,LOC103154003,LOC108233110
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27814149 ~ 27829550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800791.1
CCATCTACAAACTACAAACCCTGGCGGCGCGCTCCCGTGAAGTAAATCATTGTATCAGATTGAGACGGGGGAAAGCAGCGAGCGACTGGTCGGCAAAGCAATTCTGCTCCGCGAAACGCTGACAAATCCGACTGCTAGCCGCATACACTGCAGGGATGGCAGCCATCCGTAAGAAGCTGGTGATAGTGGGGGATGGAGCTTGTGGAAAGACCTGCCTTCTGATTGTCTTCAGCAAGGACCAGTTCCCTGAGGTCTACGTCCCCACCGTGTTCGAGAACTACGTTGCTGACATAGAGGTGGATGGCAAACAGgtggaGTTGGCTCTCTGGGATACTGCGGGTCAGGAAGACTATGACAGGCTTAGACCTCTCTCTTATCCAGACACTGACGTCATCCTCATGTGCTTCTCCATAGACAGCCCTGACAGCTTGGAAAACATTCCAGAGAAGTGGACCCCAGAGGTCAAACACTTCTGTCCCAACGTTCCCATCATCCTGGTAGGAAACAAAAAAGACCTACGCAACGATGAGCACACGCGCCGAGAGCTGGCCAAGATGAAACAGGAGCCAGTGAAGTCAGAGGAGGGCCGGGACATGGCTGGCCGGATTGCAGCTTTCGGTTACATGGAGTGCTCCGCTAAGACCAAGGACGGCGTGCGGGAGGTGTTTGAGATGGCCACCAGGGCGGCTCTGCAGGCCCGCCGCGGAAAGAAGAGCAATAAATGTGTAGTGCTGTAAAATGGCCGACATATTTGGACTGTTTTCACCCTGGGCTACAGTGCCCAGGAGCTAGGGCTCGGGAGGGACGGTGGGATTACTAgatgggagagggagggggggcgaAGAAAAGAGTG

Function

NR:

description
PREDICTED: transforming protein RhoA

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0048840 otolith development biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800791.1 True 853 mRNA 0.55 5 27814149 27829550

Neighbor

gene id symbol gene type direction distance location
sema3h NA coding downstream 10023 27741839 ~ 27804126 (-)
borcs6 si:dkey-72l14.4,LOC107717508,LOC107669648,LOC107556497 coding downstream 80623 27724512 ~ 27733526 (-)
arih2 arih2,LOC102785176 coding downstream 170154 27628180 ~ 27643995 (-)
impdh2 impdh2,LOC102785462 coding downstream 191979 27604238 ~ 27622170 (-)
dalrd3 dalrd3,LOC102786329 coding downstream 227648 27576174 ~ 27586501 (-)
tmem115 tmem115 coding upstream 4168 27833718 ~ 27842985 (-)
LOC120559481 dnajc16 coding upstream 483519 28313069 ~ 28319508 (-)
LOC120558755 lrrc47,LOC102780667 coding upstream 570597 28400147 ~ 28401849 (-)
LOC120558756 lrrc47 coding upstream 605962 28435512 ~ 28439028 (-)
LOC120558751 lrrc47 coding upstream 625358 28454908 ~ 28458571 (-)
G53671 NA non-coding downstream 59955 27728828 ~ 27754194 (-)
G53665 NA non-coding downstream 89937 27719317 ~ 27724212 (-)
G53627 NA non-coding downstream 113645 27700205 ~ 27700504 (-)
G53621 NA non-coding downstream 149037 27664038 ~ 27665112 (-)
G53619 NA non-coding downstream 169554 27644176 ~ 27644595 (-)
G53736 NA non-coding upstream 368902 28198452 ~ 28198718 (-)
G53768 LOC107716147,LOC107737696,LOC104954971 non-coding upstream 492176 28321726 ~ 28322205 (-)
G53799 NA non-coding upstream 514111 28343661 ~ 28423368 (-)
G53800 NA non-coding upstream 535946 28365496 ~ 28448206 (-)
G53806 NA non-coding upstream 546525 28376075 ~ 28376412 (-)
xpc xpc other downstream 153503 27644783 ~ 27660646 (-)
hyal3 LOC103359396 other downstream 614238 27189048 ~ 27199911 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other downstream 642917 27157588 ~ 27171232 (-)
G53444 sema3g other downstream 848126 26961347 ~ 26966023 (-)
selenok selenok other downstream 1019059 26792452 ~ 26795090 (-)
LOC120558759 NA other upstream 15714 27845264 ~ 27930515 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other upstream 323632 28153182 ~ 28186527 (-)
ajap1 ajap1 other upstream 1141736 28971286 ~ 29029321 (-)
LOC120559896 slc25a45 other upstream 1520528 29350078 ~ 29355884 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 1644953 29474503 ~ 29492975 (-)

Expression


Co-expression Network