arih2 (arih2,LOC102785176)


Basic Information

Item Value
gene id arih2
gene name arih2,LOC102785176
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27628180 ~ 27643995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800046.1
ACGCGGAAGTGACGTCATTGATAAGTACCTCTGTAACTGTCGATCTTCCGCCTACCAGCCAAGCGGACGGTGTGTATCGCTCTGTGGATTTccccacacaaaaaaacactccTGGTTGTCAACGCGGGCCGAGCCGACGCTTCTCTGAGAGcctttttttctcctcagaTCAACTTGTAACCAGCTTTCCAAATGAGTGACGGAGAGTGTGACTTCTTCTGCTTCTTCCGCTGCTGCTGAGCGCGCTCTCTACGCGCCTCAGGCAGACGGGAAGACAGGGTGTCTCTGAACAGTGACGCAGGCAGGTGGAAAGAGGTGCAGGGAGAAACGGGGACCTGGATCCGACAGGTAGGCGGGCCGTCTACCTGTGCGGGTGGTTGATTCAATCGATTGGATGTCTGTGGACATGAACAGCCAGGCGTCAGACAGCAACGAGGAAGACTTCGGAGTGAACTCTGAAGAAGAGGATGATGAGGACgatggaggagaagaggaggatcaGGGCGACATTGAAGCCTACTATGAGGGCGTGGCCAGCGACGTTGAGCAACAGGGCGCGGACTCCTTTGACCCAGAGGAGTACCTTTTCACTTGTCTGACCTACAAAGAGAGTCAGAGGGTGTTGATAGAGGAGGTTAACACTGTGGCTGCTGCACTGAAGGTTTTACCAGCAGTAGCAAAACTGATCCTGGTGCATTTGCACTGGCAGGTTTCACAAATACTGGACAGATATAAGTCCAACTTGTCTCTGCTGTTGTCGGATGCTCTGGTCCAGCCCAGCAGCACCTGCAGATCAGTCACTGTCCCTCAGTCCCTccagtgtggtgtgtgtctacaGGTCGTACGGAGAGATTCCCTGCTGGCGCTGCCCTGTCAGCACTCCTTCTGCAAAGCATGCTGGGAGCAGCACTGCACTGTCCTGGTCAAAGATGGCATTGGAGTgggtatctCGTGTATGGCTCAGGACTGTTCCCTGCAGATGCCAGAAGACTTTGTCCTGCCACTGCTGCCAGGAGAGGAGCTGAAGGACAAATACAGACGCTACCTCTTCAGAGACTATGTCGAGAGTCATTTCCAGTTGCAGTTGTGTCCAGGTGCAGACTGTCCCATTGTCATCAAGGTGCAGGAGCCCCGGGCACGCAGGGTGCAGTGTAGCCGCTGcagtgaagtcttctgTTTTAAATGCCGTCAGATGTACCATGCACCCACAGATTGTGCAACAATCCGGAAATGGCTGACCAAATGTGCAGATGATTCCGAGACGGCTAACTACATCAGCGCACACACTAAAGATTGTCCTAAGTGCAATATCTGCATTGAGAAGAACGGAGGGTGCAATCACATGCAATGCTCCAAGTGCAAACACGACTTCTGCTGGATGTGTCTTGGTGACTGGAAGACTCACGGCAGTGAATACTACGAGTGCAGCCGCTACAAAGAGAACCCTGATATAGTCAACCAGAGCCAGCAGGCTCAGGCCAGAGAGGCCCTGAAGAAATACCTGTTCTACTTTGAGAGATGGGAGAATCACAACAAGTCTCTGCAGTTGGAGGCTCAGACGTACCAGAGGATCCAGGAGAAGATCCAGGAGAGAGTGATGAACAACCTGGGAACCTGGATTGACTGGCAGTACCTGCACAATGCTGCAAAGCTACTGGCTAAGTGTCGCTACACACTGCAGTATACGTACCCTTACGCctattacatggagtctggccCACGCAAGAAACTGTTTGAGTACCAGCAGGCCCAGCTGGAAGCAGAAATAGAAAACTTGTCGTGGAAGGTGGAGCGGGCTGACACCTATGAGAGGGGAGTGGTGGGAGGTGAGGGGGAGCTCAGCGCCAGTGATAGAGGGgatCTGGAGAATCAGATGCATATTGCTGAGCAGAGGCGCCGCACGCTGCTGAAGGATTTCCATGACACCTGAAGCTCCATCGCGACTGCAAAGCACCAGCATCTCCCTCCTTACgtccttcctttcttctttgCCTCCTACCTTTGCTTCCCTCCATGACCATCCCTCGGTGAAGTCTCATGCTGACCCCTCCTTTTTGCTTCTCTACACGCTCATTCGCTTCTTTCTGTCGTTCCCTCCTCTCACTCCCATCATGCTGCAGAGTAACCTAATGGCACGATTGTTTCtccccttcctcttctcctcctcaacTCATTTACATGTTTTGGCTCCAGATCACTACATTCACCGTGGTTATGCTTGttgcagctttttttctttcagatctaatcttaaaggtccaattTTCAGGTCTTGTCGTGTCTGAAAACAGTGGGTATACTTTTAAAGCCACATTAAGCTTTTATACGCTGACACGAGCAGATAAAGGTTTGTTGAAAAGAGTCAGAGCTGTTATTCTCAAACATTATTCCTGTGATGCTGGAATAATCATTAGAGAGAAAAGGTAAAATGATGCTTGAATTAAGCTTTTGTTAAGCAGACAAAGAAGATGTGGGAGATGGAATACGCTTTCTTTCAGGAGACTGTGCGGATTGTGGATCTGTATTTGGTGGTTTCACATAGACCACAATGACTAGGGGGCACTTGCTGGCAGTTATACTTGTAGTACTTACTGGATTGACCTGAACACATGTAacgtgttttttgtttttgttttttttaacatttaaatttaaGTTACCTCTCCTAAGCTGCAAAAGGTTAATAGACATAAATGAATAAGGaattgattacagcaaagatgatgatgatgatgatgtagtAGTTGTGGAAGGTTTAATGAAAGAAGCTGTCTAGTGGAGTGGGAAATGTGTCACTGCCCTGACTTTGTTTTATCAACCAGGATAGGTGCAACTTCACACAGCCCAATGAAGAATTCTCAATGGCAGTTTATGGAGACCTTTCATTGTAAAGGTGCTTTATTTCTGCCATAAATGTGTATATGGTGTGTTTACTGTGAAAAAAATGGTGACCTCAGAGTCCCACGTACTCCTCGAAAtgaacaatatacagtattttcctACCTATAATGCATGTTTATGTAAACAAAGTACAGAAGAATAAGATGAATGTTTaaaagacaatttttttttatacatatagATTCTGTTGCCAGTGTTTCACAATAAACACAccttcccccttttttgtgtTAGTACCTAACCTGACCTACAGCTACGACTGCCAGCAAATAGTTGCTAGTCATTATGGTCAAAGTAAAACCGCTAATAATCCCATTCTTGTCTCTTTACATTCTCCGACTGATGATGTTGCTTGATTTTGTTCAGCTAGTGTAGATCCAAACCAGTGTGAGCCAGACCTTCTCCATAAAAATCTAACATTTGCACCTCCACTGATCAGATGATGAACTTAAGTGTACTCTCAGCCGTTTGTGCACACAACAGCACTCGGATATTGACACAGCATTTGCACGCACATACCATGTACACATTGACACACTTGTGCTCAAAACACTCCGCTGcagaaaataaacgttaacagtTAATCTGTCTCCTTTCCCCATCTTGTGCTGTCTTCTTTCTTTACCTTCATCCCCTCACTTTATTTTGCTCTTTATTTTCTCCTTTCTTCCTGCTCACATTGTTCACTTTTCTTCTGGAAAATGGCTGTTGATagatcgtaaaaaaaaaaaaaagaaaatacaaaaaaattgttGTAATTTTCAACGGTTGTACATTAATACAGAAATAGAGTTACTGAGAGAGTTTTTAAAACCGGA

Function

symbol description
arih2 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human ARIH2 (ariadne RBR E3 ubiquitin protein ligase 2).

NR:

description
E3 ubiquitin-protein ligase ARIH2-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11969 ARIH2; ariadne-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800046.1 True 3719 mRNA 0.46 15 27628180 27643995

Neighbor

gene id symbol gene type direction distance location
impdh2 impdh2,LOC102785462 coding downstream 6010 27604238 ~ 27622170 (-)
dalrd3 dalrd3,LOC102786329 coding downstream 41679 27576174 ~ 27586501 (-)
celsr3 celsr3 coding downstream 93306 27417463 ~ 27534874 (-)
wdr6 NA coding downstream 216377 27405416 ~ 27411803 (-)
LOC120559858 LOC102789366 coding downstream 231820 27381245 ~ 27396360 (-)
borcs6 si:dkey-72l14.4,LOC107717508,LOC107669648,LOC107556497 coding upstream 80517 27724512 ~ 27733526 (-)
sema3h NA coding upstream 97844 27741839 ~ 27804126 (-)
rhoab LOC107099133,LOC104942029,LOC100707445,LOC102225527,LOC103154003,LOC108233110 coding upstream 170154 27814149 ~ 27829550 (-)
tmem115 tmem115 coding upstream 189723 27833718 ~ 27842985 (-)
LOC120559481 dnajc16 coding upstream 669074 28313069 ~ 28319508 (-)
G53608 NA non-coding downstream 32855 27559421 ~ 27595325 (-)
LOC120558937 NA non-coding downstream 322614 27302392 ~ 27305566 (-)
G53540 NA non-coding downstream 373022 27253608 ~ 27255158 (-)
LOC120558995 NA non-coding downstream 412934 27213532 ~ 27215246 (-)
LOC120559521 NA non-coding downstream 809610 26817017 ~ 26818570 (-)
G53619 NA non-coding upstream 181 27644176 ~ 27644595 (-)
G53621 NA non-coding upstream 20043 27664038 ~ 27665112 (-)
G53627 NA non-coding upstream 56210 27700205 ~ 27700504 (-)
G53665 NA non-coding upstream 75322 27719317 ~ 27724212 (-)
G53671 NA non-coding upstream 84833 27728828 ~ 27754194 (-)
hyal3 LOC103359396 other downstream 428269 27189048 ~ 27199911 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other downstream 456948 27157588 ~ 27171232 (-)
G53444 sema3g other downstream 662157 26961347 ~ 26966023 (-)
selenok selenok other downstream 833090 26792452 ~ 26795090 (-)
dcp1a dcp1a other downstream 969859 26646814 ~ 26658321 (-)
xpc xpc other upstream 788 27644783 ~ 27660646 (-)
LOC120558759 NA other upstream 201269 27845264 ~ 27930515 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other upstream 509187 28153182 ~ 28186527 (-)
ajap1 ajap1 other upstream 1327291 28971286 ~ 29029321 (-)
LOC120559896 slc25a45 other upstream 1706083 29350078 ~ 29355884 (-)

Expression


Co-expression Network