RNA id: XM_039800524.1


Basic Information

Item Value
RNA id XM_039800524.1
length 4065
RNA type mRNA
GC content 0.44
exon number 7
gene id borcs6
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27724512 ~ 27733526 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGCTTTGTAGCACTGTGGTATGACCTTATCAATAGATACGTTGATTTTACAATAAATTGCCCTTTGTCGAGTAACAGTGTGAGACAATAAAAGACGAGCTGTGAAAGCATTGTGATTTAAAGGCCTGGACAGCTAACCAGGTGGAGGGATGAGTCTCTCCCCTGTGATTGGCACAGAAGTGCCAGAAACAGCTAACGGGGTTGTGACACCCATCTCTTCAGAGAACGGCCCTCACATTCCTGTCTCTGTGAAATATGGGGGGAGCAGAGTGCCCTGTCATAGGGAGACATCAGAGGAGAGGGCCCTTGGATACACAGAGAACCACGTAGATGTGGAAAACCGAGTTTACGATGGCGAAGGCCGCTTGGACACAGAGATGTGCAATAATGGGAGAACATCTAGTTTATCGTCACACAACTCTCATGTGACAGACCCCTCCCTTCCTGCTGCCACATGCACCGGAGACTCAGAAGACACAGAATCAGGCTCCAGAGACACAGACATTCATGAGGCCTCTAACACGGTTGAGCCTCCTGGTGCAGCTCTGCTTTGGGACCCAGCACAGCAAGCAAACTCCAAAGAGTCATCTCAGCGAGGAGGCCCTGCCACTACAGACAGGCAGCAGACCGATACAGAGACTGCAGATGGAGACACTGACAGCCGAGACGAGGAGGAagatggagagaaggagaaacaggatgaggaggacgatgagaaaaatgaaaaaaagtggaTTAAACAGCGTGCAGGAGGGAGAACAGAGTCTTCACGACACtactcctcctcagctcctggTCCCAGCACctcgtcctcttcctctcctccacctccactTCTTCCCTCCGAGGACATCCTCTGCCCCCCCCACGTCATGGCCCAGGTCTGGGTACGCAACGTCCGGGGGATGCAGGACAGCAAGAGCCTGGATGAAATCAGCCAAGCGTGTGGAGGTGGTTCAGGGGCCCGGGGAGGGGGCAGAGGTGGCCAGTCAGAGGGCAGACGGGCCACGATCTCCTCGGCTTTGGAGCTAGAGGGGACGGTCAGCCAAGAAGGTGACCTGACTCACTTCATCACCAAGAACCTGGAGCAGAAAATTAAGATGAGCTCCAAGCCCAGTCTGGACTGCAGTGACTCGGACTGTTCAGGTCCCATCTACAGAAGCCGGGGGTTGTCACGGAGACCAGCGGACATCCCTCCCATTGATCCTGCTGTTCTTTTGGATCTTCAGAGACACACCCAGGACGTGGCGCACAGTGTGGAGATGATGATGCGGAGCCTCAATGGAACCAtccagaatATGACAGCTCTGAGTGTGGGCTACATCCAGACCTACAGAGACTCAGTGGACAGCCTGGGAGAGTCTGTGGACATGAGTATaaagGGCATGTACACACTGATGGCTCGCTGCGAGGAGTTAGATCGTTCCATGCAGCCCATACACACCCTGGCTGCACAGATCCGTGACATCAAACGCACCCTGGACGCTCTGGAGACGATCTGCAAGTAAACCCCACCTCCAACATCAAGCACATCCTGAACGAGGCCGTCTGCAAGTAAGCCCACCTTTCTGCAGGTAGAACACACACTGCAGCGAAGATTAAGTGCACCTCTGGATTCCTGGAACCATTGCTACTAGGCATGCTGGATGATTGGCGCTCATAGTCCCTCCGCTTGTTCATCATTTGAAGATGACCATGTTTGTGTTATGAGAGTTCAACTGAATTGCGCTTGATTTGCTCTCGGGGCTGACCTTTCtcatcttttttcatttttttttttttttttttttttttttttaaagtaacctAACTTCCTATAATGAAGTTGTCGTGAAACAAAATCTCACAAATTAACCCGTTTTGGAGACACTTGGTCAAgtgccacacaaacacatgagcacacacatgaaaacagatccTTGATGATGTGTGTGGGAAGATACCCTCTTTTTCAACTTTACAGTCTGCGGAGGCATAGTGTGTCATAATCCGTCCAGCCTGCTTTGTTCAGATTGCACTAACCTTTCCTCCCCACATGGGGGcgatgtttctctctctggctctctttTTGCTGATGAAGAGGCCGGTATGAACTGCTCAGAAGAAAGTGACTTTTGCACAGGAACAGAAAgtctattttttaattttatgcagcaaagaggggaggggagcagcgtgtctgcctgcctgtctgtcttttttaatgtttatttatttagttttctcATCATGCTTGCTTTTCCAAAACTGCTACTCTGTGTCAGTGGGAACTGACCGGTACAGCCAGATTTTTTCCCCACTGGTGGCCACTAAACAGCCCCACTGGAGCATTTGGAGATTAAGCTCAAATGTTGCTTGAGTTTACACTCAAGAGGCACTGTCAGAGGTAATGGAAGTGTTTTACCTTTTCTACTCAGATTCTCTCAGACTGTTAATCAATTAACTGGCAACCTTTTAAATCACAGATCTGCTTCTCTAATTTAAAGCTACTACTAGCCACGTGTCCTAAAACCTCACCTTCCTCCTCTGTGTCAATGCAGTCCAAGATGTTTTGGAGCACATAACTATACAATAAAATATCTTGTGTAGCCTTCACAGTGgctttaaatatttgaaaagCTTTAGGTCCTGATTTGACTTTTAAATGTCATCAAAAGTAAAAACACTCCATGCAAGACTGATACATTTAGCCAAcctaaaacattttctcaaGTCATTGAAAATCTAATTTAATTTCCAGGCATCCGAGTAGCTAACAGACTGCTCAGTGTCATTAATTGGGTTGTGTAATTTCAGTTTTGATTCAGCCAATTTAAAGAAATGGTCTAATTTATTAGAATAGCTCAGTtgcaaaacacattttgaatCCATTTACAGTAATAGCAGCCAATGTTCAACCataacaatacattttaggTTTTGGCGGTGGATACCTTTATTTGGAACATAACTCTGCATTTATTCTGCACTGACTTCATTCGCATCTGATtcttggggggagggggggatcctgtaaattaaattcaaatctGTTATGGCATGCTTCTGATTGTACACAAAGAAACAACAGTTAAATTTCTGTGCAGCATGTCCGAGCTTTTGTTTTCTTCAACATTGAAAAGATTGGACACAAAGTTTGGAGGATTAAATCTAGGAAACATCGCTGGAGTCGGGACAAAGGCTTCTTTTTTGAAAGAAAGCATGTGAACTAACGTGGACGCATATCACGTTTCATTGAAGTGagtatttattaatttactcGATGATAAAAGCCACTGAAAGACTACAGTGTGGCTAGGCTTAGTTACTTTACCAACCTAAAGCCATTTTCTCTCATGGAGCATTATACTTGATTAAGTGAAGAGACTGTGGTACGTCTGTCATTGCACTGGTGGGTAGCCTTGTTGTAAATTATTGTACGCGTACTAGATTTACCAACTTGTACGTTTACCTATTACTGATAGCAGCCAACATGTCATTTGGTGGATTTTGGGATGTTTCACCTACAAAACGTTATCCGAGCAATACTGCAAGCAAATAATTACACATTTTAATCTTGGCTCTGCATTGTTGAACTGTCTCTACATGCGGCTCTGCACCTGTTAATGTGTTTTCACCTCTATGGGAAAAGATCATGTTATTGGCTTCACAAAAAGCTCAGATAGCATTCTGTGTAAAATCTGCTCTTTGTCTCCTTGTCACTTTCAACCTTGTTGGCAAAGGTTTGTTAAAATTGTCGGGAAGAACATTAAAGAGGAAGGGGAGCATCTTTAAAAAGCTTACATTAAAGGATATAATTATACTGGTTATCTTGATTATGCTGACGTTTACTCAAACATGTCCGTGGCTATAAAGATATAAATGCTCTTTTGCAGATGAAGGTAAATGTCCAGAGTGGACCTTTTGGCAGTCTTGGTAGATTTTTGAGGAGCAAAAGAATCCTTGAGATGGGAGGAAATGTCACTgttaataatataaatgtattaaattcattttctgttgtaCAATCAGATGCACCTGTGTAGATATGATCTCTTTCTGTAACTAAAAAAATGATTTAGATA

Function

GO: NA

KEGG:

id description
K20820 BORCS6; BLOC-1 related complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71730 lncRNA downstream 300 27719317 ~ 27724212 (-) True G53665
TU71686 lncRNA downstream 24008 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 59400 27664038 ~ 27665112 (-) True G53621
TU71678 lncRNA downstream 79917 27644176 ~ 27644595 (-) True G53619
TU71665 lncRNA downstream 129187 27559421 ~ 27595325 (-) True G53608
TU71739 lncRNA upstream 112387 27845811 ~ 27847273 (-) False LOC120558759
TU71786 lncRNA upstream 439964 28173388 ~ 28183007 (-) False LOC120559779
TU71811 lncRNA upstream 465028 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 588302 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 610237 28343661 ~ 28423368 (-) True G53799
XM_039801615.1 mRNA downstream 63866 27644783 ~ 27660646 (-) True xpc
XM_039801616.1 mRNA downstream 63866 27646702 ~ 27660646 (-) False xpc
XM_039800046.1 mRNA downstream 80517 27628180 ~ 27643995 (-) True arih2
XM_039800045.1 mRNA downstream 102342 27604238 ~ 27622170 (-) True impdh2
XM_039800992.1 mRNA downstream 138011 27576174 ~ 27586501 (-) True dalrd3
XM_039801752.1 mRNA upstream 8415 27741839 ~ 27804126 (-) False sema3h
XM_039801751.1 mRNA upstream 8415 27741839 ~ 27804126 (-) True sema3h
XM_039801750.1 mRNA upstream 9526 27742950 ~ 27804126 (-) False sema3h
XM_039800791.1 mRNA upstream 80725 27814149 ~ 27829550 (-) True rhoab
XM_039800944.1 mRNA upstream 100294 27833718 ~ 27842985 (-) True tmem115
XR_005639350.1 other downstream 63866 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 525685 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 534315 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 553345 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1742585 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 2027650 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 2027650 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2237772 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2237772 29971196 ~ 30072699 (-) False tafa5l

Expression Profile