RNA id: XM_039800944.1


Basic Information

Item Value
RNA id XM_039800944.1
length 4012
RNA type mRNA
GC content 0.48
exon number 3
gene id tmem115
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27833718 ~ 27842985 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGGCAGACAGCGCAGGTCAGTAGCTGAGTGGTGGTACAGGCAGGGAGGAGTGCCTGCTAGATAAAATAATTTTCTCCGGTGACCTGCTCTCAAAAGACGGAAGACCAATACAATAAACGAATGAAGCTAAGGTAGTGTGAAGAACCGCTGAACTATTCGCGAATTGACGCTGGTTCAGAAACGTCTCTAACATTGTTTTGAAGGCCTGTTGCTAGCTACGAGAATCCTCGGGCTAGCCCGGTAGACACCGGGCCGAGAGTGCGCAAGGGACCAGGACAGGGGCTCCGTAGGTTGGTTCGATCGACCAGGTTTTAACTGATGCTGGCTGCCCTGTCTTATAATCAAACCAAGAcgtaacctctcctcctcctccgtggCGGATATAAATCAGCGTAACTCAGTTtgacagctagctaacattagctctcCTGTGTTTACAAGCTAACACAGCCCAAACCCTTTGAAGAAGTTGGACACTTGGGTATATTTGTTTTAGTTAGGATTTGCATATTTGGGTGCTACCACCTGCCTGCTAGCTGGTGGTGATTTGTAACCTTGTTGTAGTTCTGTCCACGCCGACTAAAGGTCGCCAGCCCGGCAGCTAGATCAAAAAGTCTCCTAGCTACGGTTATCGCATTCTTCAAGCTTATCTACTGCTGCCCAAAGTTTGTTACCTTATTTGAATAGAAGGAATAGACTACTGAGTTGATTAACTAAACTATCTTTAACCAGTTGAAAGACAGTAATCCGGATGAAGGCTCACAGAGAAGTGTGGATTTTGATGCTGTCAGGTTTTGGAGGTGTCACCTGTTATTCTTGGCACTATTAAATCTCACACCGGGATCCAACATCTGGTGCACCAGAAGCAACTGATCTGCTGTTTCGCTATCTCGAACTGATTTGCTCAAGAAGGATCCTCTTCAAAACAGACCACAATGAATCGTTACCTGCCAGTGGCACGGCAGCACTTTCTGGCTGCCCTTGCCAGCACCAGTGTGGTAGTGAAAAGTATAAGTGCTGTGGTGGTACTACTCTATCTTTTGTCATGGGCTGTCGACACTCCATACGCACTGGGGGTGACACCAGGCTACCTTTTTCCGCCCAACTTCTGGGTGTGGACACTGGTGACCCATGGGGTGGTAGAGCAGCATGTCTGGGGTGTGGTGGCCAATGTGGGGATAGTTATGGCCTGTGGGCGCCTGCTGGAGCCTCTGTGGGGCGCTCTGGAGCTCCTGATCTTTTTCGCAGTGGTTAATATCTCTGCAGGCCTCCTGGCAGGCCTCTCCTACCTCCTCACCTATGTTGCCACCTTCGACCTGGACTACCTGTTTGCTGTTCGTGCCTATGGAGCAGCTGGGTTCCTGGGAGGTGTCCTGGTGGCGCTGAAGCAGACCATGGGGGATACTACAGTGCTCAGGGTGCCACAGGTGAGACTCAAAGCAGCTCCAGCTttggtcctcctcctcctggccTTGCTGCGCCTGGCAGGCCTGCTCGACAGCTCGGCCCCCCTGGCTGCATACAGCTATGGTGCCCTGTCCGGCTGGGTCTACCTGCGCTTCTACCAGAGGCACAGCCGGGGCCGTGGGGACATGTCGGACCACTTTGCCTTCGCTAGTTTCTTTCCTGAGGCGCTGCAGCCGGCCGTGGGGCTGCTGGCGGGGCTGGTCCACTCCGCCCTGGTGAAGGTGAAGGTGTGCAGGAAGATGGTGAAGAGGTACGACGTGGGGGCGCCCTCCTCCATCACTATCAGCCTGCCAGGGACGGACCCACAAGATGCAGAAAGGAGGAGACAACTGGCCCTCAAGGCTCTGAACGAGCGTCTGAAGCGTGTGGAGGACCAGTCCGCCTGGCCCAGCATGGACGACGAAGAAGATGACGACGACGACGAGGTCAGGACCGACACACAGCCGCTCCTCCCGGGTGGGCgtgacccctcctccacgccgAGACCAGCAGCAGGGGGACCGGTCGGCGGCTCgctctcctccacctcctcatcCTCAATGTCGCAGAGCAGCGGAGGGCCGTCCACAGGCGGAGCGCAACACCCAGAGTCCAGCATTATCAGCTTCGAGGATGCACCTTCTAGATCGTAACAAATAGAACCCACGTGTACAGATACGCACGCTCTGTTCGGTGTCACTGGAAGGTATACTAGTGTAGTCAGCGTCCCTGACTAGTATACAAATATGTTCAGTGACAGTGAGTAGGTATACACTCGATATCCCACacgccaacacacacaacatcttTGACCAGTTCATACACACGGACCGTGCGCTCACAAACAGACTGTCAATGTCATGATGAAGcccaaagggggggggggtaactGTAAAGTGCTTTCAGTTCAGACATGTTGTTTGTAAATGCTCAGTGTAGATGGGCAAACTGGACACTTAATTCTTCTTCCTTCCTGCATACGGCCAGAAATTCTGTCTGGTTCCGGACATAATCGGAACTTAGAGTCCTCGGTCCACTGCTTCatgttgtctctttctctttctttctaaataaataacaaaatgggTGTACAATATTCTTTTTTCAAGTCTTTTTCGGAGCAGCCATAGCTCTCTGATGGCCTGCCTTGAGAAAGCTTGCAGTGACAGAGACGCACGCTGACTTCTCGATTCTTGATGAAAGGCCGACTCTATGCGCTGAAAAGACAAATTGGCTGCAAGTGACAGTGGATTATGGTTAACTGGTTCTTGATCAGAAACCAGGTGTGTAACGGAGGAAGTATGACCAGCACGTTCTCGGCAGAGGTGCTGGACCAGAGGAAAGAAGCTGGTGCAGGTCTGTCCTGCTGATAAACTATGATACAAAACTTCAAGATTTGAAGAGGTGAAAATCATTTTTCCGGGCCAGGTTCGTTTGCCGCCTGGTGTCTCTGTGGAACAACAGGCAGAGAAATGGACTGGTGGTGTACCCATTTTTTAATCCCCCGTTTGTCGTTCAAATGAGAACaattgtgtattttatttttcttctagaTCTGTTTGTGACTAAacaaaatccccccaaaaaaaaaaaaaatcttttgtttctgtgcacTAACCAGACACGTTCATGACGTTACACTCTCACACAGATCTGTGGATGATGATTATGATTCTTGTTTTAACGAATTTATTGCATTTTTCAATATCAAGCCTACTCCTGGAGCATCATCCTGTACCGTTTTACACTTTCACCTTCTATGATCTGAAATGATACAAGAATTATACAATAATCTGGGTGCATGTAATACAGAGTGGTCACTGTCTGTCATGGTTGTGTTTTTTCGTTTGGTGCCATTACAAATGCAGACATGGGTAGAGACTGGTTATTCAGACTGTGCAGGTGTTTTTAGAGTTGCCGATTCAGAGTTGGTACCTGTGCTGTGTCAAACTCTGCTCCCGATTTGTCGATCGCAGACTCGTAAATGACTCCACAGGCAGCGGACACCTGCGCTGATCAGTAAGCAGCCTGGCCAGGGTTTTCCCAGTCACATcctttgcacttgtaaaatctTTCAtttctgggggaaaaaaaacaaaaaaaaacacagtgccAAGCAGAGCCAGTGTTGAATCATTTTCTTGGGAGGTTGACGGGCAGCTAAATTGTTtcataaaaaaacacttcataAATGCTATGCAGTCAGTGATTTATACATGTTGTAGACAGTCATCGCTGTAGATGTGGCAGGCTATTATGGTAATGGTCTTGATCAAATCATTTGAATTCCCAATTTCCCTCCTGTCCTTGTTGATTAAAGTCAGTTGCAGCCAATACATTATTTCAGACGTTGCCATCACGGTGATGACAAATtgataaattatttttaaacttgTGATCAAGaggttgaaaatgttttcatattAAATGGGAATTTCCAAATAGAGGTGAACCATGCAGAATTTGCAATCTGGAAACTACACAAAAATGTATGAATGTAAGTAAGTACAGCAATGTGTTGTTACATGTTTAATTCAAATATAAAGTTgaagttttgtttttca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71737 lncRNA downstream 79524 27728828 ~ 27754194 (-) True G53671
TU71730 lncRNA downstream 109506 27719317 ~ 27724212 (-) True G53665
TU71686 lncRNA downstream 133214 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 168606 27664038 ~ 27665112 (-) True G53621
TU71678 lncRNA downstream 189123 27644176 ~ 27644595 (-) True G53619
TU71739 lncRNA upstream 2826 27845811 ~ 27847273 (-) False LOC120558759
TU71786 lncRNA upstream 330403 28173388 ~ 28183007 (-) False LOC120559779
TU71811 lncRNA upstream 355467 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 478741 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 500676 28343661 ~ 28423368 (-) True G53799
XM_039800791.1 mRNA downstream 4168 27814149 ~ 27829550 (-) True rhoab
XM_039801752.1 mRNA downstream 29592 27741839 ~ 27804126 (-) False sema3h
XM_039801751.1 mRNA downstream 29592 27741839 ~ 27804126 (-) True sema3h
XM_039801750.1 mRNA downstream 29592 27742950 ~ 27804126 (-) False sema3h
XM_039800522.1 mRNA downstream 100215 27724512 ~ 27733503 (-) False borcs6
XM_039799963.1 mRNA upstream 2279 27845264 ~ 27930515 (-) False LOC120558759
XM_039799964.1 mRNA upstream 2279 27845264 ~ 27930472 (-) False LOC120558759
XM_039799962.1 mRNA upstream 2279 27845264 ~ 27930472 (-) True LOC120558759
XM_039799967.1 mRNA upstream 2279 27845264 ~ 27886138 (-) False LOC120558759
XM_039799966.1 mRNA upstream 2279 27845264 ~ 27883348 (-) False LOC120558759
XR_005639350.1 other downstream 173072 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 634891 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 643521 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 662551 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1633024 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1918089 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1918089 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2128211 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2128211 29971196 ~ 30072699 (-) False tafa5l

Expression Profile