RNA id: XM_039799966.1


Basic Information

Item Value
RNA id XM_039799966.1
length 8307
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC120558759
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27845264 ~ 27930515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGCCTCACATTCACATAGCCGTTGACCAGAGAGGAGCACACACAGCGGTCGGTTAGTAGGCGCTCAGTCACTGAGGCAGTAGATTAAAGACTCGCTGAATGCAAAACAAGGCTGAGAAGAGAAGAAATACACCTCCTGtttactttgtcttttttttaagtgttttttttattttttcctgaaAGAGGAGGTGGTTTTGTGAGTTTGACGGGGAGCTCGAGAgcaagagataaaaaaaaaaaaaaagcacagaagaCCGCCACTCTCTTTACTCGATAACCATGCTGCTCCTGGACGAATCCGAGTCCTTTGCAGACCAGTCCCACAGCGTCCCCTTCAGCTCCGAAAATGAGGCTCAGGGAGGCGACTCGGCCGCGTGGCAGTGTACCCCTCCCCCATCTACCTCACCGTCTGGGGGGACACTGGCCCGCCCTCCTCCCTCCCAGCCCAAGTCCAGACCCTGCTCGAGGCCGGCCAGCCAaagcccctcccctccctccgccCTGACAGGAACCAAGAAGAGAAGCTCCAAACCGGCACACATGAGACGCAACATCAGgaAGTTACTGAGGGAGCATCAGTTAGAGGCAGTGACCAAAGCCGCCCAGCAGGACGAGTTGGAGAGGAGGCGACGTCTGGAGCAGCCGAGCAAACCAGATTTCCCCGTACCACTGCTGCCTGAATACACAACTGGTGATGTGACAAAGCATGTGTCGGCATCAACGGCGTCGCAGCAAGAAGTGAAGTCGGTCAGACAGGAAGTGATCTGCCTGGACTCCAGCAGCACTGGCATCAGCGAGGACGACTGCAAGACTAACGTCCCCACCTCCGCAGCCAAAGAGCACACACGAAAACCAGATGTGATCGATCTGAGCTCGGACGAGGACGAATCCATCGTCCACCTCGGCAGCGAATCCACCATCGAGGAAGAAGAGAGCGAGCAGAGCGGCGCGCACATCGACGCCCTTAACCGAGCGGACAGCCAGGGCAGGGTGCTGGTCAACCTGAACCATCCAGCTGCAGAGGACGACATTTTCCTGTCAGCTCAGCTGGCGCGAGCAGTCAAACCTCACCAGATCGGTGGGATCCGTTTCCTGTACGACAACCTGGTGGAGTCGGTGGAGCGGTTCGGCAGCAGCAGCGGATTCGGCTGCATCCTCGCTCACAGCATGGGCCTGGGCAAAACGCTGCAGGTCATTTCTTTCATCGACGTCCTGTTCAGACACACCCAGGCTCACACCGTGCTCGCCATCGTACCTGTGAACACACTGCAGAACTGGCTGTCAGAGTTCAACATGTGGGTCCCGCCCCTGGAGGCGTTACCTCCAGATACCGACCCGGGACTGGTGACGCCTCGTGCCTTTAAGGTTCACATCCTCAACGACGAACACAAGAACACAACGTCCAGAGCCAAGGTGGTGGAGGACTGGGCTCGGGACGGAGGGGTGCTACTGATGGGCTACGAGATGTACCGCCTCCTGTCGCTGAAGAAGAGCTTCGTGGCTGGGAGGAAAAAGAAGACCAAGAAAACAACGGGGCCAGTGGTCATCGACCTGGATgaagaggacaggcagcaggaACTGCTCAAAGgtaTCGAGAGAGCCTTGGCCCGGCCTGGTCCAGACGTGGTCATCTGTGACGAAGGCCATCGCATCAAGAACTGCCACGCCAGCACATCGCAGGCTCTGAAGAACATCCGAACCCGACGCCGCGTGGTGCTGACTGGCTATCCGCTCCAGAACAACCTCATTGAGTACTGGTGCATGGTCGACTTTGTCCGACCCGACTTCCTAGGTACACGGCAGGAATTCAGTAACATGTTTGAGCGTCCCATTCTTAACGGGCAGTGTGTGGACAGCACACCTCAGGACGTCCGGCTGATGAGGTACAGGAGCCACGTCCTGCACAGCCTGCTGGAGGGCTTCGTACAGAGGCGAGGTCATGACGTCCTGAAAGACCAGCTACCCTCTAAAGAGGAACATGTGATCCTGGTGCGTCTGTCTCCCCtgcagagggcgctctacacaGAGTTCATGAACCGCTTCAGAGAGGCAGGAAACTCCGGCTGGCTCAGCCTCAACCCACTGAAGGCTTTCTGCGTCTGCTGCAAGATTTGGAACCATCCAGACGTGCTGTACGAGGCCTTACAGAAGGAAAACCTGGCCAGTGACCAGGACTTGGACCTTGATGAAATCACTTCCACAGGTCCTGCCCGATGTCCAACCGCACCCAATCAAAAGCCCAAGCGCCTGGAGAACCCTAACCCCATTGATGGACTGAGTCTCAACCAGCTGCAGGAGAAAGCCAATCAGGTCATCACTTACGAATGGGCAAAGGACATCATGTATGACTACAAGCCCGGCCTCCTGGAGAACTCCGCAAAAATGGTGCTGCTGTTCCATCTGATAGAGGAGAGCGTCAGGAAGGGAGACAAAATCCTCGTCTTCAGTCAGAGTCTGTCCACGCTGACGGTGATTGAGGATTTTCTGGCTAAGAGACCAGTGCCTCCCTCGCCCAACACGTCCAGCAGAGACAGACCCAACCAGAACTGGGTCCGCAACCTCAACTACTACAGACTGGATGGAAGTACAGCagcctcagagagagagagactgataaACCATTTCAACGATCCATCCAACACCTCAGCATGGGTCTTCCTGCTGTCAACCAGGGCTGGTTGTCTGGGCGTAAACCTGATTGGGGCGAACCGTGTGGTGGTGTTTGACGCCTCCTGGAACCCATGCCATGATGCCCAAGCCGTGTGCCGCGTCTATCGCTACGGGCAGAGGAAGCCATGTCATATCTACCGGCTGGTGTGCGACTTCACGTTGGAGAAGAAGATCTATGACCGTCAGATCTCCAAACAGGGCATGTCAGACCGGGTGGTGGATGACCTGAACCCTGTGCTGAACTTCACCAAGAGAGAAGTGGAGTCTCTTCTTCACTTCGTGGAGGAGGAGCCGGACCCGTCACAGGTCCAGCTGCAGCCCCACGACAGCATGGAGAGCGTCCTCAGGAAGGCTCTGCTCCACTATCCTCACCAGGTTACTAAGCAACCATTCCCCCACGAGTCGCTGCTGATAGACCGCAGGGAGCTGAAGCTGAGCAAGGCTGAGAAGAAAGCAGCAAAGAAAGGTTACGAAGAGGAGAAGAGGGCGTCTGTGCCATACACCCGCCCTTCCTACGCTCACTACTACCCTGCCAGTGACCAGAGCCTCACTAACATCCCCGCCTTCAGTCAGAGGAACTGGCGACCACCTCCGCGTACTGAAGAGAAGCCCGGGGCCAGTGTCCGGCCAGTCCAGTCAACTCCAGTTCCCATGACGCCCCGTCAGGCGTCTGCAGGCTCCGACCCAGGCAATGACTCGTCAGGATCCAGCCTCGGAGGTTTTCCTATCAACTGCCTGCAAAAAGCCGGGGTGTTTGTACAGAGGATCGTCACCACTACTGACATCGTGATTCCAGGCACCAACAGCTCAACAGATGTCCAGGCCAGGATCAGTGCTGGAGAAAGCATCCACATCATAAGGGGCACCAAAGGGACTTACATCAGGTCGTCTGATGGTCGAATCTTTGCCATCAGAGCGGCTAATAAGTCCAAGActgcaggggagagttctacaGCGCCACCCAAAGACTCCCAGGCTGTACCAGAGGAAGTGTCAAACAAAGGCAGTAACGGTTGCCTGTCacctgacaggaagcagcaggtaCCCTTCAAGACTGCACCCCGCCCTCTTTCACCTGACGGCCCAGAGATCATCAGCGAGTTGCAGCGCTACACGGGTAGCACTGGAGCTGGCCCCGCCGCAGGCTCCGGAGCTCAGCCGGAGAGGGCAGCAGAGAGCACCATGAGCAACCTGCCTTCCACCAAACCGGTTCAGACCAATGGCAGCAGTGGGAGCAGTTTTGCTCCTGAAAATATGAGCCACCATGATGCCTCTGTGATTAGTGTAATCCAGCCCCACATGGACGCCACTGCAGCCCAAGACCTGAGAACAGGTTCCAAGCGCAATGCCTCTACCCCGCCCCTGGACGAGCGGCCCAGTAAGCAGCCCTCTGCAGGCAAACACTCCTCAGCCCCTCTGGCCACACAAGGCTTCCCCTTCACCGGGGGCTATGGCCACCCTCCTCTCCGCCTCAGCCCTGGCATGTTGGGTGGATCACTGGGCCACCCGCTCTTCATGGGGGCAGGCTCGCCTTACTTCCAGCCCCCCCACACTCAGCTGGGGGACCCCAGTTATACGTACCCAGATCTGTTCAGCTTTGGCGGAGCCAGTGCAGTCcccacctcctcttcctcttcctgctcaACAACCACTGCGGCTGCCGTCTCATCTTCCTCATCATCTTCTGCATCAGTCAAAGCTGCCAGTTCCGTTCCAGGAGCCCTGCCGCCGTTTATGCTTTGCCCCAGCATGGTGGGCATGGCTGGGATGCTTCCAGCAGGCTTCCCTCTGTCTTACAGTCAGTCCATGGCTAGCCTCTACACTGGCTCCATGCTCCCTGGAGGGCTGCCAGGTCCAGCCGCCACTCCTGGTCCAGCTGGAGCCAGCTTCCTCTCCCAGTACCCTCCCACTGCTGCCTCCAGTTCCTCctcatcttctccttcatccttTTCCCCTTCAGCGCGGTCTGAGGGCTGCCGTGGCCCGGTGCTGATTAACTGCGGGATTGTCAGCAGCGCCAGCAGCTctgatgatgacgatgatgtaATTGAGGTGAGGGGACAGTGACAGACGAATGATGTGGTTGTTTGAGCAAGCTTGATTCAATTTAGAAATCATCAAAATGGGATGACATCCTGTTTGCCGGGCTTCAAAGGGCCTGTACCCGAGGCCGTGAGGGAAACGGACAAAAAATGAAAGGCAACTGACATGGTGACAACTGAGCCCCTGCTAAAGTGTTTCCTCGGTTCGTCTCTACTGCCTTGGAGAAATAGTCTGAATGGGGATTGAACAAAGATTGGACACCGAGCGACAAATCTTAATGCTGACTGTCAGAAGATGAAACCAGGggaagaagaaaatgaaaatcagagGACTTTGGGCTTCCAAGTTTTTGTCCAAAACTGGCATTGAAATACTAATCACTGGACTTAGAACTGCTGAGTGTGGGCCTGCAGTGACCACAAATGGCCACTAGTTGTAGTGTTGACTTTAGAGATTCTAGTTCTGCAGCTTTGCAAAATGTCAactctttttgctttttttccagCTAATCAAAAAGATGACTGTAGCGTGGATTTGCTTTTAAGTTTGAAAAATAAGTAAGCTGGTAGAAACGTTTGTTAAATATCAGTAACTGAAATGGTATTCTTCGTTAGTTGTTAAATATTGCTACTGAATATTTTCTTCAAatggtaaaaagaaaaggtaaaaaagatcaaactgaacttaaaaaaaaaaaaaaaaaaaagcattttgatTGAACAGAATAATTCACTGCCAGGACAAGGGGGTATTGTACGTTTTTgtttctgaagaaaaaaatactaCAGAAGCGGGATCATCTTGGATTATTGAAGAGGCGGttgaggcttgatgaggttaaAGGCAATTACTGCAACCTTAAAACTATAATGAAAGAATGTATGCCTAATCAAATGCCTTTAAACTAGGCCTTTTTTTGAAGACTCCTATTCAAGCATCAGACGTGGGAAGATCtgatttttcttattttgtgcattttatatttatgtaatCTCTTTTGATTTTTAAAGAACAATTATTGCCTAAAGACAGCCAGGTgaaaaatgagaagaaaaaaaactgtgttcttGTGAGGTGTCCTCCTCGTAGCGGAGAAACAACCAACAGAAAATGCCTTTTTGCCTCCATCTTTCTGAATGTTAActgtgagagagaagaggtaAAGAGAGATGGGCGGTCACTGCGGCTCTCTGAATCTCACCCACAGTCTTACTGTAGCCTAGCAAAAAGCGATGCAAAACACTCACTCAAGCCTATATATGTATTCGTACAACCCCAGAGGAATTAATCTTGCAGACCCCAAGTTTTGGTTACGCTTGTCTCGTTACTGTgttcgtgtctgtgtgtgtgttgttttttttttcttcttaaggGTTACAAAAGGAATCGtttaaaaatttgaaaaaaaagaaacttgcGTGACTCTGTTTGGTAACTCGTTCTGACGACACAGATTCCAcctctctgctctgctgtttttttatttccctctttCATCTCATTTTGTGAACAGAGGTCATTGtgaaacagaatttttttttttcttttttggaagAGATGGTGATGCTTTGCCAAAAAAACGAGAAATGCACATCAGAGACCTCCATGGAAGAGAATTGTCTTAAGAGACTAAATAACAATGTAGAGCAGAATTAAAACTCCACCACAGCAAACGCGCTGTCTCTACAGCATCCTCACAGCCGCAGCCGAGAAGTACATATCCATCTCTCTGTATGACCTTGCAGGTAACACTGTACTGCACTGTACTACACTGTAAAAGAGACACAAATCTGTATAAGTCTGTAAAACGGTTGAAAGCTGGGAAAGCTTCAGCATGTGACCAAGTTCCCTTTAAATTAACTATAAACCATCGCTCTGCTGTTCCAATTGATCCCCTCTGATCACACAAAGCGATCTAATACAGTCTGCACAGTCCTTCAATGGAAAATGTTCTCCTCCAAAATGGCTGCAGCAAGAGCTTCAAATCCCACCAGCTCTTTTGTTGAAAATGAAACTCGGAAACATCGTCAAGTAAAGACTGagaattttcagttttttttagttttttttccctatTTCCTGTATTTGTTCTTCATGCTGAAATTGTTAGTTTACTTATGTTTCATTTTTGTTCTCTTCTTTTTACAATGTTTGAATTTACCAAATTAATTTATTCATAACGGtgcatatttattcatttttatttttgtacaatgttctttttcttggtttccctttttattgcttttctttattttgtttgtacgATTTGTATGGTCATATTactattgttgttgttaaagtGACGAGTCTGACCCAGCACATGTGAACTTGCATGTTGACCAACCAATTAGTGCATTACTGTGCACATTAATAGCCAGGGTAGAAGGATTGATTAATTATCATATTCCAGTTGCGATAACTCTGATCGGCTCTTGATTATGATAACGCATCAGGGATACACTGATATTAACCATAATGCTGAGCTGTGTTAAAACCTTCTTATCTATATGAGCTCGGATTCATTCATCAGAATGTCCTCCCTGTTCACAAGTTTGTTCACAATTGGGATACAAATCTTAAGTATTTAATAATATGAGCcatttatgtgcatgtaaatgaaGCTCATTCACAATGGGTCAGAAACTGAAGCAGTCCAACCACTCATCatctgaaaagaaagaaaataataatcaaaagcttttctttccttttatttgttgttCATTGCCATATCATCAGAAATGTCCATCTGTGTCATCCCTATGATggcaaaaaaaagtttcttcAGTGTTGACCCGTTTGGTTGTCAGCTCTGCGTTTGTCGCACTGACTGCTCTTTTATTTTACAGCTTTCTACTTgaatttacatatttatttatacaaaTCGATTCGGtcgactgtctgtctgaatttTAGCAGAGTAGAAGATTAAAGCTGCTGTCTTTGAGGATTGGCTCTATTCAAAGCCTGTTGTGTAGTTTATCGACGGATAATGTGTATGACCTTGGATTACTTTTagatcctctttttttttttttttgcttttttgaagtttgtaaataaaaagaaacatgtttaaaaaaaaatacttttcctAATTTCTTTACATCGATAGTAGCAGCAGATGTAATGTATACGCCTGTAtgtctctccctcacacacacaaacacacacaccaacacagtcTGTTGCACACACCAGTATGTGACAGAACAACTAAGCTGCTTCCAAAAAAAGGAACCACTTTTACAGTCACACGGCAAGtataagtagtagtagtagtagtcgtAAGAGTATTATTTGCTCTCAACCATAACCCTATGAAGTATACACAATggtatattgtattgtataaatTGTAACACTGTAATGTACAGTGTAAATTTGTCTTGAAGGAAAAGAAACGTGTAATCTAGGGTAAGCAGACTGTAGACTCCATTTAAGAGAGAAAATGTACCCAAAGACCCTAAAACTGTTTGTCTGATGTTCCTTAGAGTTCATAGACCATTGAAGTACTTGGTGGTGTCTTTTTCTCTGTCCTTTGCAATAATAATCAAGCACTCCTAATAAAAATGTGAGAATCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71737 lncRNA downstream 91070 27728828 ~ 27754194 (-) True G53671
TU71730 lncRNA downstream 121052 27719317 ~ 27724212 (-) True G53665
TU71686 lncRNA downstream 144760 27700205 ~ 27700504 (-) True G53627
TU71680 lncRNA downstream 180152 27664038 ~ 27665112 (-) True G53621
TU71678 lncRNA downstream 200669 27644176 ~ 27644595 (-) True G53619
TU71786 lncRNA upstream 290040 28173388 ~ 28183007 (-) False LOC120559779
TU71811 lncRNA upstream 315104 28198452 ~ 28198718 (-) True G53736
TU71852 lncRNA upstream 438378 28321726 ~ 28322205 (-) True G53768
TU71905 lncRNA upstream 460313 28343661 ~ 28423368 (-) True G53799
TU71917 lncRNA upstream 482148 28365496 ~ 28441652 (-) False G53800
XM_039800944.1 mRNA downstream 2279 27833718 ~ 27842985 (-) True tmem115
XM_039800791.1 mRNA downstream 15714 27814149 ~ 27829550 (-) True rhoab
XM_039801752.1 mRNA downstream 41138 27741839 ~ 27804126 (-) False sema3h
XM_039801793.1 mRNA upstream 269834 28153182 ~ 28186527 (-) False LOC120559779
XM_039801789.1 mRNA upstream 269834 28153182 ~ 28186527 (-) False LOC120559779
XM_039801791.1 mRNA upstream 269834 28153182 ~ 28182845 (-) False LOC120559779
XM_039801790.1 mRNA upstream 269834 28153182 ~ 28179897 (-) True LOC120559779
XM_039801792.1 mRNA upstream 269834 28153182 ~ 28176757 (-) False LOC120559779
XR_005639350.1 other downstream 184618 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 646437 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 655067 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 674097 27163286 ~ 27171167 (-) False ifrd2
XR_005639094.1 other upstream 1592661 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 1877726 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 1877726 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2087848 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2087848 29971196 ~ 30072699 (-) False tafa5l

Expression Profile