RNA id: TU84834


Basic Information

Item Value
RNA id TU84834
length 509
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G63283
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20024899 ~ 20025407 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggatgtggccttgaccaactgccactttgctcatttgaaagccatgatgtctctctctcatgggcgggccaaattctctgggcgggcaaagcagagaaaggggaggtaaccttgctccttatgacctcataaggagcaagattccagattggcccatctgagctttaattttctcaaaggcagagcaggatacccagggctcagtttacacctttcgccatttctaaccactgtgaaattttcatgccatgggacctttaaatttgtCTTCAGTGTTGGGTTGAAATGGCACATTACACAAATCAAAGaccacaattacattttttaaattagtgTCCATGTATGGGTTGAAATTACAAATTGGGTTTTACTGTGCATGTCTTCCACAAATTCCACACTGTAATTACACTGGTCCAATTAAATAAGGCCACGCATCATACAGATGTCCTTTGATCATTTATTTCCACCTTTTCATCGTAAGACACCGTGAAAAGtacaagaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84833 lncRNA downstream 3225 20021304 ~ 20021674 (-) True G63282
XR_005639546.1 lncRNA downstream 11991 20010897 ~ 20012908 (-) True LOC120560985
XR_005639547.1 lncRNA downstream 23126 19993573 ~ 20001773 (-) True LOC120560986
XR_005639588.1 lncRNA downstream 293570 19730681 ~ 19731329 (-) False LOC120561342
TU84430 lncRNA downstream 484779 19536578 ~ 19540120 (-) True G63039
TU84835 lncRNA upstream 505 20025912 ~ 20026668 (-) True G63284
TU84853 lncRNA upstream 55825 20081232 ~ 20082982 (-) True G63297
TU84843 lncRNA upstream 71543 20096950 ~ 20098798 (-) True G63291
TU84876 lncRNA upstream 84009 20109416 ~ 20110841 (-) False LOC120561469
TU84875 lncRNA upstream 84075 20109482 ~ 20110841 (-) False LOC120561469
XM_039803914.1 mRNA downstream 44446 19958934 ~ 19980453 (-) True hip1rb
XM_039803915.1 mRNA downstream 47515 19958934 ~ 19977384 (-) False hip1rb
XM_039803913.1 mRNA downstream 66863 19951818 ~ 19958036 (-) True LOC120560981
XM_039803910.1 mRNA downstream 73606 19948803 ~ 19951293 (-) True rilpl2
XM_039802407.1 mRNA downstream 87425 19891771 ~ 19937474 (-) True LOC120560172
XM_039803919.1 mRNA upstream 19194 20044601 ~ 20066733 (-) True kntc1
XM_039803893.1 mRNA upstream 49186 20074593 ~ 20076892 (-) True si:ch211-110p13.9
XM_039804625.1 mRNA upstream 84804 20110211 ~ 20124872 (-) True LOC120561469
XM_039803464.1 mRNA upstream 108896 20134303 ~ 20152099 (-) False LOC120560702
XM_039803465.1 mRNA upstream 108896 20134303 ~ 20152098 (-) False LOC120560702
TU84540 other downstream 293326 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 470005 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 824666 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 922449 19101241 ~ 19102450 (-) False ficd
unassigned_transcript_264 other downstream 1071337 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84919 other upstream 245370 20270777 ~ 20282211 (-) True G63345
TU85094 other upstream 666471 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 1590816 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2804788 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 3249513 23274920 ~ 23281086 (-) False smim15

Expression Profile