RNA id: TU84876


Basic Information

Item Value
RNA id TU84876
length 1319
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC120561469
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20109416 ~ 20124872 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagatattcaaaacattttcaaagaaATGCCTATGTATTTCATTGTTTCATACAGAAAGTATCTTAATTTCGAAGAAACCTTTTGGAAAGGACATTTCACTGGAACTGAGGGGTTACAGTTAGGCGTGAAGTGCTTTAAGTTTCAccgcttctttttttaaacaatcacCCATCAGTTCCTTCATGAAGACCATAAAAAAGTTCCTAAAGCCAAACAGCCCTGGGTCTCACTGCTCTACTCCAGGCAAGAGTGAGAAAATCTCTCCCCTTTGATTACCCATCACAAAATTACATACATACCATCAAACCTTTAAGTACATACTGTAGTATTTTCaggcataaaaaaataaactatagcTCACAAATTTTTTGCGCAAactgatatttttttcaattcaaataaacACCTTTCATGATACTATATTATCTTTGTATCTCCCCAACGAACTGTGCAAACAATGTTAGGATATTGATAAATTAAAATATCTGAAGATCATCGCTTCTCCCACATCCACCTACAGTATCTCCTCATTCACACAAacccaggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacacacacacacacacacacacaaaaaaaacacccaggacacacacaaacccaggacacacacaaacccaggacacacacacacacacacacacccaggacacacacacacacacacacacacacacacacaaacccacacacacacacacacacagtgtaggaTGTGTGAATTTTTGGAAAGAGATTCTGAGGAGATCATTCTCCAATATAAGCCCTTATGGACTGGCATGGACAATAAAGACGCTTGGCGGAAACAAGCACACGAAATGCACACATACAAACCAAGACTTTGAAAGCACGGCGTAATCTAACATGATGTGCAAATATACTGATTGTGCGAACGAGGGTGGAAAAAGGCTTAAAAGGTCTGGTCGTCATTACAGGATTCGGTCCAGTGGCCAAAGACCTCACAGATATCGCAGTAGGACCGTTCTTCGCCCTTATTGCCGTGGTAGGTGGTGTGTGGAGGGGAGTCGGGCATCTGCATTTGTGTGGGACAGTCCTCGGTGTCATGGAGGTCGAAGCAGTCGCAGATGTCACAGAACAACCTAGGAGGAGCCTTCTTCTTCACGGGTTCCTTGTCATGTCTGCAGAAAAGAAATCAGCTCTATGtgtaactaaaaataaaaaaagttgtacTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84843 lncRNA downstream 10618 20096950 ~ 20098798 (-) True G63291
TU84853 lncRNA downstream 26434 20081232 ~ 20082982 (-) True G63297
TU84835 lncRNA downstream 82748 20025912 ~ 20026668 (-) True G63284
TU84834 lncRNA downstream 84009 20024899 ~ 20025407 (-) True G63283
TU84833 lncRNA downstream 87742 20021304 ~ 20021674 (-) True G63282
TU84906 lncRNA upstream 94407 20205248 ~ 20206522 (-) True G63334
TU84920 lncRNA upstream 158279 20269120 ~ 20282211 (-) False G63345
TU84985 lncRNA upstream 281575 20392416 ~ 20392627 (-) True G63397
TU85033 lncRNA upstream 344029 20454870 ~ 20455970 (-) False LOC120560417
TU85048 lncRNA upstream 447504 20558345 ~ 20558857 (-) True G63450
XM_039803893.1 mRNA downstream 32524 20074593 ~ 20076892 (-) True si:ch211-110p13.9
XM_039803919.1 mRNA downstream 42683 20044601 ~ 20066733 (-) True kntc1
XM_039803914.1 mRNA downstream 128963 19958934 ~ 19980453 (-) True hip1rb
XM_039803915.1 mRNA downstream 132032 19958934 ~ 19977384 (-) False hip1rb
XM_039803913.1 mRNA downstream 151380 19951818 ~ 19958036 (-) True LOC120560981
XM_039803464.1 mRNA upstream 23462 20134303 ~ 20152099 (-) False LOC120560702
XM_039803465.1 mRNA upstream 23462 20134303 ~ 20152098 (-) False LOC120560702
XM_039803463.1 mRNA upstream 23462 20134303 ~ 20152098 (-) True LOC120560702
XM_039803462.1 mRNA upstream 41827 20152668 ~ 20159699 (-) True cfap251
XM_039804639.1 mRNA upstream 61145 20171986 ~ 20177047 (-) True gtf2h3
TU84540 other downstream 377843 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 554522 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 909183 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 1006966 19101241 ~ 19102450 (-) False ficd
unassigned_transcript_264 other downstream 1155854 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84919 other upstream 159936 20270777 ~ 20282211 (-) True G63345
TU85094 other upstream 581037 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 1505382 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2719354 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 3164079 23274920 ~ 23281086 (-) False smim15

Expression Profile