RNA id: TU84920


Basic Information

Item Value
RNA id TU84920
length 1680
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G63345
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20269120 ~ 20282211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACTTtgagtaacattaataatgcATTGTCACAGATATGTCACAGGTACACAATAAAAACAGCTTTTATTCGAGGggcgtttgtgtgtatgtgtgtgcgtgtgtgcatgtgtctacTACCACACAATCTAAAATCAATTCAAGTCATTTTAAACAATGACCAAGAATACGTTTTCGTTAACCAAAAAAGGGGATTTATCAACCTTTATTACAAATCATCAAGAACCATAACCAGTTGACAGTACAACAATTCATCTAATACTGTAGATGCTTAAGCTGCAGGTGTGAAAACCCACACAAATAGAATAAGAATCTTAAACATTATATTTGCGGTTCTTTATTAGAAACCAGCACCACCAGAATAACCTTTGAGTTTCATCAGGTAAGGTTCAGAGACAGACCGACAGGAGGAGAACCCACAAATCTGATCGCCCTTAACACAAGTACAGTTTTGGCTCAATATGATTTCGGACACATTCCTGGTTCTGCAGTGATGCAGTcacttcattttcacttttaacaGTTATGTGAATACAAACCAAATTGATTGACTCATTGGGTTTGTTTTCCAATTTTTCTTGGGTTGACTGAATATGCAGTTCTACTCCCTAATGTGATTCAATAtctacattttgaacaaaatcCCTTTTCTGAAATAAGCAAAACCACCACAGCTCTGCTTTGCACCACAGGAGTTTGTAGTCTGTCAGCCTGTCAGAGACCTTTACCTGCACATGAAACATAACAGAATACTTTCTGTACTGTCATTGATCTTCTGTGTTTAAAGTGTAGAGCAATACTTCAGTTGATATGCATTGCCATCATAATGGAATGACGAAGAGTGGAAACTTCTACAAATCTATTTCTTTTGACAACAGTAACatatagggatgcaccgatagagGTCAATGATAATTATTGGACAAAATTCCCTTTATCTGGGTAACATATGGTATGTGGAAGACCAAACCACCACAGAAGAATTGCAGTTCCCTGCAACAAatatttcaattattttatCCAGTGACAACAAAGTAATGGTGGAGCCTTAAATTGTTCTGTCACAGTAATGGATGGAATCAATACTCAGTTTTGGGCAAAAGTTTCCAGAGTCCAGATTCAGCATCATGAGTGAAGAATAGgcatcggtgcatccctagtaccACAAATTCATTATAACTCACTGCAGCGTTTCGTTCCCTGCAGAAAGCTCCGGAAGGAATGACTATCGACTCGTCTTGTAGTACCACTGGAATGAATTAATGCTGTCTGGGCTCACATTACGAATTAATGGCattctcttacacacacacacaccgataaagacaaaacacacaatatTCAGAGGGCaggtttatgtttttaaataaatgtaatgagGTGATTTTGGTTAGTAATGTGCATCAGTCTTGGGATACTGTGACACAGTAGCACCTAACTAACTTCAAGTGGTggctgatatacagtatgtgtctgaATTCATGTTTATTAATGTATGTGTGGGGTACATATgtatcattgtgtgtgtgtgtgtcaaaagttgcaaaCAAACTTGCGTTCACTGTCTATCTCCGTTTCTGTGGTTGACCAGGATAGTGTGCGGGAGTTTATTTGCAGATATCCGTAAGCtaaaatatgtacaatatgtgCTGTAAAGTAAGTTGTGAAGTACTTCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84906 lncRNA downstream 62598 20205248 ~ 20206522 (-) True G63334
TU84876 lncRNA downstream 158279 20109416 ~ 20110841 (-) False LOC120561469
TU84875 lncRNA downstream 158279 20109482 ~ 20110841 (-) False LOC120561469
TU84843 lncRNA downstream 170322 20096950 ~ 20098798 (-) True G63291
TU84853 lncRNA downstream 186138 20081232 ~ 20082982 (-) True G63297
TU84985 lncRNA upstream 110205 20392416 ~ 20392627 (-) True G63397
TU85033 lncRNA upstream 172659 20454870 ~ 20455970 (-) False LOC120560417
TU85048 lncRNA upstream 276134 20558345 ~ 20558857 (-) True G63450
TU85052 lncRNA upstream 337852 20620063 ~ 20620339 (-) True G63454
TU85054 lncRNA upstream 352050 20634261 ~ 20634501 (-) True G63456
XM_039804643.1 mRNA downstream 87007 20178565 ~ 20182113 (-) False LOC120561476
XM_039804641.1 mRNA downstream 87785 20178184 ~ 20181335 (-) False LOC120561476
XM_039804646.1 mRNA downstream 88146 20178565 ~ 20180974 (-) False LOC120561476
XM_039804644.1 mRNA downstream 88146 20178565 ~ 20180974 (-) True LOC120561476
XM_039804645.1 mRNA downstream 88147 20178565 ~ 20180973 (-) False LOC120561476
XM_039804551.1 mRNA upstream 23146 20305357 ~ 20308633 (-) True rfk
XM_039803975.1 mRNA upstream 46066 20328277 ~ 20348190 (-) False LOC120561015
XM_039803976.1 mRNA upstream 46077 20328288 ~ 20342053 (-) False LOC120561015
XM_039803977.1 mRNA upstream 46079 20328290 ~ 20342413 (-) False LOC120561015
XM_039803968.1 mRNA upstream 46244 20328455 ~ 20348190 (-) False LOC120561015
TU84540 other downstream 537547 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 714226 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 1068887 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 1166670 19101241 ~ 19102450 (-) False ficd
unassigned_transcript_264 other downstream 1315558 18953490 ~ 18953562 (-) True trnak-uuu_13
TU85094 other upstream 409667 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 1334012 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2547984 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 2992709 23274920 ~ 23281086 (-) False smim15
TU86268 other upstream 4784634 25066845 ~ 25070763 (-) False LOC120560369

Expression Profile