RNA id: XM_039804643.1



Basic Information


Item Value
RNA id XM_039804643.1
length 639
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120561476
representative False

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20178184 ~ 20182113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGCAACTGTTGCTTCTTTGACTTCTACAGTAGATATGCTGGCAGCTGCAATAGTTCTGCCATATGGCACAAGAGTGAGACCCTCTTCATATTCATGCATAAGGAAGCGATCAACATGTCTTCTGAGGAGGAGCATTCTCAgacttcctcttcttcccctccctcctcctcacttCCCCTTGTCTCCCACTTCATTGGGAAGAAGGACAACATTGTCAAGGCCGGACGCATGACCACGATGGTGAATGGCTGTAGAGACATACTAGTCCTGTACCACCAGGGGCAGCTTCATGCAATGGACATGCGCTGCTACCATTCAGGTGGTGCATTACAATATGGAGACATTGAGGAGTTTAATGGGCGGCTGTGTATTGTATGTCCGTGGCACAAGTACAAGATCACACTCGCAGAAGGGGAAGGGCTTTACCAAGCTGTGGATGATCCCACAGCCAAACCCCTAAGAAAACACTGGCGCTCCAAGGGTGTCAAACAGAGGATTCACAAGGTCACTGAGGTCAACGGGAATGTATACGTAACACTGAATGACTCAAACGAGGCCATCGAGTCAGATGTCTATCAGACTGAGAGATATAGGACTGGCTTACTCAAGGCACAGCCAAAACCCATGCCCAAGAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84876 lncRNA downstream 67724 20109416 ~ 20110841 (-) False LOC120561469
TU84875 lncRNA downstream 67724 20109482 ~ 20110841 (-) False LOC120561469
TU84843 lncRNA downstream 79767 20096950 ~ 20098798 (-) True G63291
TU84853 lncRNA downstream 95583 20081232 ~ 20082982 (-) True G63297
TU84835 lncRNA downstream 151897 20025912 ~ 20026668 (-) True G63284
TU84906 lncRNA upstream 23135 20205248 ~ 20206522 (-) True G63334
TU84920 lncRNA upstream 87007 20269120 ~ 20282211 (-) False G63345
TU84985 lncRNA upstream 210303 20392416 ~ 20392627 (-) True G63397
TU85033 lncRNA upstream 272757 20454870 ~ 20455970 (-) False LOC120560417
TU85048 lncRNA upstream 376232 20558345 ~ 20558857 (-) True G63450
XM_039804639.1 mRNA downstream 1518 20171986 ~ 20177047 (-) True gtf2h3
XM_039803462.1 mRNA downstream 18866 20152668 ~ 20159699 (-) True cfap251
XM_039803464.1 mRNA downstream 26466 20134303 ~ 20152099 (-) False LOC120560702
XM_039804551.1 mRNA upstream 123244 20305357 ~ 20308633 (-) True rfk
XM_039803975.1 mRNA upstream 146164 20328277 ~ 20348190 (-) False LOC120561015
XM_039803976.1 mRNA upstream 146175 20328288 ~ 20342053 (-) False LOC120561015
XM_039803977.1 mRNA upstream 146177 20328290 ~ 20342413 (-) False LOC120561015
XM_039803968.1 mRNA upstream 146342 20328455 ~ 20348190 (-) False LOC120561015
TU84540 other downstream 446992 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 623671 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 978332 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 1076115 19101241 ~ 19102450 (-) False ficd
unassigned_transcript_264 other downstream 1225003 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84919 other upstream 88664 20270777 ~ 20282211 (-) True G63345
TU85094 other upstream 509765 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 1434110 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2648082 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 3092807 23274920 ~ 23281086 (-) False smim15

Expression Profile