RNA id: TU86666


Basic Information

Item Value
RNA id TU86666
length 669
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G64735
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26191984 ~ 26245476 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCAGCTGAGAGCATCTTTAATTAATCAACATCACAAAGGtcttactgtactgtacataataCTGTGGGACTTAGAGTCAGCATGCTCGAAGATACTGAAGAACCAAGATAAAGCATAATTCAGCATAAGAACACACTTTTGACAGTCCTTTTGCTTCTTCACAGTACTGTACAGACTCCATTTTCCAATCTGACCAGCAAAGCATAATCttccaaaatacaaaaaaaggagattttttttaataatctgtgAAGAACTGTTACTAAACATAATGTTAAACAGAgatttctaaaacaaaaattCAGTTCTGGTCCTATTCCTTCACCCAGTGCAGCACAGATGAGGCCAATACAAGGTGGGATATATAATTATTaactatacatatatacatacacaccaGTGGTGTATCAGGTGCAGGTATCTACAGTGCCTTTACTTCAGGCGCATATAATACAGTCATAAAAGTGTAGTGCAAGCTTATTCCACATCACATATTTGATGACAAACATGCTTAAGttcatttctctttttcttttgcaaTATTTATTCTCTTAGTTCACCTCATCCAGTGCTCTAACAACTCTTGAGGAaacaacagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86659 lncRNA downstream 11779 26179149 ~ 26180205 (-) True G64730
TU86615 lncRNA downstream 239405 25951534 ~ 25952579 (-) True G64693
TU86583 lncRNA downstream 267199 25924569 ~ 25924785 (-) True G64673
TU86427 lncRNA downstream 566485 25613513 ~ 25625499 (-) True G64541
TU86426 lncRNA downstream 618889 25569974 ~ 25573095 (-) False G64541
TU86710 lncRNA upstream 58348 26303824 ~ 26321936 (-) True G64768
TU86736 lncRNA upstream 78358 26323834 ~ 26383383 (-) True G64786
TU86739 lncRNA upstream 79426 26324902 ~ 26328398 (-) True G64788
TU86737 lncRNA upstream 126158 26371634 ~ 26383383 (-) False G64786
TU86832 lncRNA upstream 202887 26448363 ~ 26462070 (-) True G64852
XM_039802635.1 mRNA downstream 18099 26162568 ~ 26173885 (-) True fahd2a
XM_039802634.1 mRNA downstream 18260 26162568 ~ 26173724 (-) False fahd2a
XM_039802636.1 mRNA downstream 18890 26162568 ~ 26173094 (-) False fahd2a
XM_039802760.1 mRNA downstream 252214 25931173 ~ 25939770 (-) True LOC120560360
XM_039802132.1 mRNA downstream 278355 25854920 ~ 25913629 (-) True msh3
XM_039803669.1 mRNA upstream 87539 26333015 ~ 26338501 (-) True LOC120560807
XM_039803668.1 mRNA upstream 93360 26338836 ~ 26342111 (-) False prnpb
XM_039803667.1 mRNA upstream 93360 26338836 ~ 26342111 (-) True prnpb
XM_039803646.1 mRNA upstream 98465 26343941 ~ 26356838 (-) True letm2
XM_039804493.1 mRNA upstream 167352 26412828 ~ 26414627 (-) True cldn5a
TU86475 other downstream 528614 25659575 ~ 25663370 (-) False mrps36
TU86476 other downstream 528614 25659575 ~ 25663370 (-) False mrps36
TU86477 other downstream 528614 25659575 ~ 25663370 (-) True mrps36
TU86478 other downstream 528614 25659575 ~ 25663370 (-) False mrps36
XR_005639498.1 other downstream 644132 25489965 ~ 25547852 (-) False commd10
TU86779 other upstream 194558 26440034 ~ 26447513 (-) True G64821
TU86838 other upstream 223682 26469158 ~ 26514720 (-) False dynll1
TU87012 other upstream 560196 26805672 ~ 26811283 (-) False LOC120560729
TU87050 other upstream 642531 26888007 ~ 26891271 (-) False sb:cb288
TU87051 other upstream 642531 26888007 ~ 26891271 (-) False sb:cb288

Expression Profile