RNA id: XM_039803646.1


Basic Information

Item Value
RNA id XM_039803646.1
length 4047
RNA type mRNA
GC content 0.46
exon number 11
gene id letm2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26343941 ~ 26356838 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTACAGTACGACCTTTCAGTGCAGCTGCCTGGGAAGGCTGCGCATGCCGAGCGGACGACGAGGAGCTGAAATACGACGACTTAAAAGTATAAACCCACCGTTAATGGGTTTATTATCACACCAGCCGTTGCTTTCGTCGCTCCCGTTTACCTCGACCGATTGTTGTGAATGGATTATATTATTCACGTCTCACCGAGAAGCCTTACAACGCCCAGTCAGCAGCGGCAGCCATAGCTCCGTCATTGACGCTGGAGAATACTATCATCTGTCTCTACAATGGCCGTCTTTAGTCACCAGGTACTCCTTGCAGTAACAAGATCAAGGGGATCATACTTATTATCCAAGAGGCACAGCTGCTCCTCTCTGTCTTCCAAAGCCTATCTCCACATAGACCCTTCTCGCCAGGTCTCATCCTTCACACTCAGGCACTCCCGCTACGGCTCCTCCCACGGTTACCGAGACCACGCCCTCGGCAGTGGCCACAACTCCGCCCTGCTCGCCCGCTCTCTACACAGCTCAGGTGTTTGGCTCCAAGACATAAAGCAGGAGGACACTAAAACTTCACCAGCTGCTGCCCAGGATGCTTCTCCAGGAGCTAAAAAGGACTCTGTGGCCGCTGCACCCCAGTCCCCACCTCCATCAGTTCCCACTCCACCGCCCGCCGCCACTACAACGGCTGCCGTCCCTCCGGTGAAGGAGAGGGCAGTCGTGAAAAAGGCTCTGTATCAGAGGATTGTGGATGAGTTGAAGCATTACTACAATGGCTTCCGGTTACTCGGCATCGATATTAAGATTGCAGGCAGGATGGTGTGGAGGCTGCTGCACGGACAACTGCTCACACGCAGGGAGAGGAGAAGGCTGATGAGGACCTGCGCTGACCTGTTTCGTCTGGTGCCCTTCACAGTGTTTATCATCGTTCCTTTCATGGAGTTCCTTCTTCCTGTCTTCCTAAAACTCTTCCCAGAGATGTTGCCCTCTACCTTTGAGACAGAAACCAAAAagGAGGAGAAGCAGAAGAAAGGTCTGGCAGCGAAGTTGGAGCTGGCCAAGTTTCTCCAAGAGACAATCGCTGAGATGGCTCGAAGGAATAAAGCAAAAGCTCAAACAGAAGATGAGACACAGCGCTTCTCCACATATGTTCAGAAGGTTCGGGGCACAGGCGAGCAGCCCACCACCAAGGACATTGTCCGGTTTTCGAAGCTGTTTGAGGACGAGCTGACGCTGGAGCACCTGGAGCGCCCCCAGCTGGTGGCTCTGTGTAAACTGTTGGAGCTGCAGCCCATCGGCACTAACAACTTGCTGCGTTTTCAGCTGATGATGCAACTCAGAACCATCAAGTCAGACGATGAGATGATTGCAGCAGAGGGTGTGGCAGCTATGAGCGTGTCAGAATTACAGGCAGCGTGTCGCAGTCGTGGGATGAGGTCTCTGGGTCTCACCACCGACCAGCTACATCAGCAGATGCAGCAGTGGCTGGACCTGCACCTGAAGGAGAATGTTCCTCcatcgctgctgctgctctccagAGCCATGTACCTGACTGACCTCAAACCAAAAGCTCCAGTCATCCCGCCTGTTCCCAAACTAGAGaaagCTACTCCGCCTCCAGTGGAGAATACAGGAACAAACACGACCTTAGTCAGCACTGACATGTTGGCGGACCCTGCTCTCATCATCAAAGATAGACCGGTGGAAGAGATAAGAGACAAGGCTCCTATAGTGTCGGACAAACCTCTGACTCCTGCTGAAGTCCTTCAGGCTAAAGCAGCAACAGAGGTGTCCCAGAAGAGCAAGATGAGTGCCAACGGTGTGTAAAGTGGAGCAGGAGCCTCTGGACTGAAGGGAGGATGGACTCAGCTCTGTGTCTTTGGGGGGTGAGATGGATGACGGGGGTGTATGCACTGGCTCCATTCAGCATCGTGTCTGACATGTTGATGAGACGACTCATCTAGGAGTCCTGTTCCCTACTTGTCCGTCTCTCTGTTAACACCCTGAAAAGTTCTGTTGCCTCTTCTACTTCGTCTCAGCAGCTTTAAACCCTCTGCTGTCACATTGGTGCACTCCATTCTCTGTCACTCTCCATTCGAGCTGGACAAACCAGACTGACATTTCACTGGACTGGCAGACCATTGATGGTGTGATTACTTTGACCTAATGTCCTGGATGCGCGCCCAAACCACCCAACAGCAGAGCCTGGTCAACTGTCTGTTTGATGGTGTCTCCTTACAGTCTAGATggtctccttctcctcctcctgtacatttgtaaatatcCTGTATATTTCGGTCTCTGTCTTACAtcgcagcagcagcggcagcagcttTGTAGATTTTGCTATGCaaaaaaagtctcttgaaaatgtttttctctcttGGCAGTTTCAGTTTGTATTATTTGGAAACCTTTTTCGCTCCTCTTCAGGATATAAGAGAAGTCATCCTTTTTCCAGACATATGTTGCTGAACGTTTTGGCTCAGTAGCTGTCCCACCTTCATCTTTGTTCAGTAAGCTGGACCATACTGATGTGCTGAAGCAGACGGCACATTCTGAACCTGCGATTGAATAAAAAGCAAAAGGTTCAGTCAATTTGTCATGATCTTATTTCGTCAGCTGCAGATTTGGACCGGCCCTGACTCGAAAGAGGGTGACATTGTGTAGTTGCTTGGTGCTTGCTGCTGCAATTAGCAAACAAAAGACTGCTAAATTATAAGAGAGGTCACTCCTTAAACCCAGAGGTGACTGTGGTAAAGTGCAGTCTGCCGCCACTGGTAAACCACTGAACAGAcaatttgtaaaaacaaaaaacacaaggaaTGTGCAGATTGTATTTGCATAATACAGTGTATGTATGATAccaatatttctttaaactgAAATGAGAAAATTGATGTTatccattaaaatatattattgatATGGGGAAGAAGTGTAGCCACAAATGAgattaatgttatttttttggtaTTGTGGCCCTAAAAGAGTTAAGAGCATTATGAATAACTAtcttactgcattatattacCCTAAAAGCTGTAATTGGAAGGTTTACCACATAAATGTGTACTGTGTAATacagtgttgtgtgtttgaCAGTGCTTATTTTCCATCCCTCTTTATACATTTGACATTGTTGGAGTAACTTTTTGTCTCCATACATTTTACTTTATTGCTATTAATCCACAGGCACATCCCAGAAGTGGATGCCATAAATAAAaggatattttttaaacaaaaaagataatgaaTGATTGATGATGCTAATGAAGATTTATATTATTGGTTTTACATTTGTGCCTAAGGTAAAAGGgcgattgtgtttgtgtttgcatttttcatCAGAGTACAGATTTTCTATATTGTACCATTGTCAGTTTTTGATTGATCATCACCTCAGTGTGTTTAAAGCCCCCAGTTGCACCTTTTCTCTTTAGTGGAATGTCTCCTCCTTTTCCCTTCCCCATTTGATCCAAATATAAATCCAAATGTATCACCTGTGTTGATACTGATGAAAAAGCAATCACCTTTTCAATCACCTCTGCACTCGTGGTGCAAAGGGGatcaaaacctttaaaaaaagatttttcatCTCTGGTTTGTGCTCCATATTTGAAAGAAATTCCAACACATTTTGAGTAGATGTGAAATGATTTATGCAACATTTAtggcatttaaacaaaaaatgtaaatgtatgtcCCAGTTATTTGACAGGATGCATTCTTTTGCCCACAGATATTCCTTCTTGTCCTAAATTACCTTCCTTGTGtcacttctttctcttttcatcaGCATCATAGTGTGTGTTAACAACATGATGCCTGTCTGGAAACTACAACTTACTATTGCTATCTCAGATGGTCTGTTACATCAATGCCATGATGATGCGTCCTCTGTCTTTAAGGATTGTTTCTTTCAGTTAAAAAATGCACTACTGTCCAATTACTTCTTCCCCCGAATAAAATGTATGCATCACTTTATCAGGGCATATGAGTGTCTgggtgatgggggggggggataattCACACAATTAAAATCATTAAACCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86739 lncRNA downstream 15543 26324902 ~ 26328398 (-) True G64788
TU86710 lncRNA downstream 22005 26303824 ~ 26321936 (-) True G64768
TU86674 lncRNA downstream 49321 26204295 ~ 26294620 (-) True G64742
TU86737 lncRNA upstream 14796 26371634 ~ 26383383 (-) False G64786
TU86832 lncRNA upstream 91525 26448363 ~ 26462070 (-) True G64852
TU86841 lncRNA upstream 149007 26505845 ~ 26511346 (-) True G64859
TU86842 lncRNA upstream 149007 26505845 ~ 26511346 (-) False G64859
XR_005639598.1 lncRNA upstream 223041 26579879 ~ 26580815 (-) True LOC120561456
XM_039803668.1 mRNA downstream 1830 26338836 ~ 26342111 (-) False prnpb
XM_039803667.1 mRNA downstream 1830 26338836 ~ 26342111 (-) True prnpb
XM_039803669.1 mRNA downstream 5440 26333015 ~ 26338501 (-) True LOC120560807
XM_039802635.1 mRNA downstream 170056 26162568 ~ 26173885 (-) True fahd2a
XM_039802634.1 mRNA downstream 170217 26162568 ~ 26173724 (-) False fahd2a
XM_039804493.1 mRNA upstream 55990 26412828 ~ 26414627 (-) True cldn5a
XM_039804410.1 mRNA upstream 139584 26496422 ~ 26499331 (-) True mrpl40
XM_039804314.1 mRNA upstream 155627 26512465 ~ 26514745 (-) True dynll1
XM_039804320.1 mRNA upstream 174504 26531342 ~ 26537704 (-) True polb
XM_039804318.1 mRNA upstream 181232 26538070 ~ 26541738 (-) False enkd1
TU86475 other downstream 680571 25659575 ~ 25663370 (-) False mrps36
TU86476 other downstream 680571 25659575 ~ 25663370 (-) False mrps36
TU86477 other downstream 680571 25659575 ~ 25663370 (-) True mrps36
TU86478 other downstream 680571 25659575 ~ 25663370 (-) False mrps36
XR_005639498.1 other downstream 796089 25489965 ~ 25547852 (-) False commd10
TU86779 other upstream 83196 26440034 ~ 26447513 (-) True G64821
TU86838 other upstream 112320 26469158 ~ 26514720 (-) False dynll1
TU87012 other upstream 448834 26805672 ~ 26811283 (-) False LOC120560729
TU87050 other upstream 531169 26888007 ~ 26891271 (-) False sb:cb288
TU87051 other upstream 531169 26888007 ~ 26891271 (-) False sb:cb288

Expression Profile