RNA id: TU86841


Basic Information

Item Value
RNA id TU86841
length 2697
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G64859
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26505845 ~ 26511346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTCAGCTGTTAGAACAATACTAAATTGTATTCTGTTAGGAAGGATGGCTGCAAGTTAATCGGACGGAcggacacagaaaaaaaaaaacgaggcaAAAAGAGGGTATTAGACGATGGTACTCTTTATTACAACACATTTAGAAAACCAGCTTGTGTGGGAAGACACCATTAGACAAGCTGAAGGAAGAGCGCAAGTACCCTTTGAGCTGAGGTACTTTCTTGATGAGGGGCAGGAGCTGAGCATCAACAGCCTTCtggtcctctttcctctgctcTGTCAGCTGGTACTCTCTTTCTCTGTATCAAAGATCTCTCCCTCCTGGTGACGGGGCCTCctcagcttcttcttcttgaaGTAGGCATCGTTGAGAGTTTTGGGGATCTTCATGCCAGAGATGTCGATTTTGGTGTTTGTGGCAATGGAAAACTTCTGGTGAGCCCTGCGCAGGGGTACTCTGTTCAAGGCAAGAGGGCCTACAATGACGAGCAGGAGACCACTTGAGAGCTGCTTCAGGAACACCAcacTTTCCACGGTGGCGACCAGTAAGCAGAATGAGGACAGTTCCTGGGGTGATGGAGCTGCGCAGCTTCCGCTTGTGCTGGCTGAAGGGTTTCTTCCCATGGCTCTTCAGCTTACGTGGAACATCCTCTGTGGGGTAGTAGCGAggctacaacagcagcacatgGAAATATATATTACCATTTTAAATCTAGGTTTGCTGCAAAAACCCAgttgagacacacaaacaaaaaacaggtTCATTAATTTTCACTTATGGCCCTGACACCCCAAGCTGACGGCCAAGAACTAACGGTGACGAAGACGACTGTGGCATTGCCTAATGTGTtgccagaaacgtgtctgaagcggtgctgctgctagccttgtctgtacacatgtaggTTTCCCATAAACAAATCTATAccgatttgattacagcaaagacaacgtccggcagtattgatggcaaaataggctacagaatatttcgttctgtattgacaggtgcaatattagaaaattgattttttattacatttatatctgcattttagcaaaacctagagactttcaaacatcaacatgtcttACCGACaaacatctttttgtatccCATTTTGCCTCGAAACACTTCCAACATGCACCTGAGACGTgcatgtcacgcaggcagtgtgtaagctctaacctgttaacatgggagtcGAAATATAAACTGTAACCGGCCTAAGCAAAGAATTCTCCCTACGGTGGAAGAGGAGGGACCAAACCCAAtactttccattcagaacagAAGACAAAATAAGTACTACTTTGCACAAGTAATTTGCAAAATAGTTTGATTACGTTTTAGTGATTGATGAAAATTctgggtttttttgtttgttttttaaaacacatcttAGTTCTGATAGTACGGTAGAATAGTCTTAATATtggcatgagaaaaaaaaaaaaaaagttgatcaTCCTTTAAACAGTTGATATACAATCCTATAGTCAGGCACACATCCTAGACTCCATGTGTGCCAATTCCATTTCTCTGTCAGCACAATGACATTTACAGTTCCAACTCAAacaataaggggaaaaaaacaacaacccaatTCACACATTACCCACCATTTTGCGCAGCTTGACGACACGAGTGCCTCCATTCTTGTCTCCACCAACTGTCTTGACAACAGTTGCCTGGGGTTTCACCTTAAGCTTTTTCCACCTTGGTCTCAGTGGTCTTGGTCTTCCTCTTGTACATGGCCCTGCGGGCGTACATAGCGGACCGGGAGTAACGGCCGATGCCCCGGACCAGAACCGGGTTACGGCTCCCGTGCTTCTTCTTGGCAGCCTTTTTGTCTCCCTCTGCCATCTGACACAAGGCAAAGTAAGACATGTTAGTATACCAATTGCAACAATAGTGTGTAGTGTCAATAATCTCAAAAGGATTTTATTTGATGTGGCTCATTTTTTTATAATCCTGAGACCACAAACCATAGTCTCTTTGATTGGATAATGCATTGTATACCGTTTAATAGTATTATGGTTCTGGTATCAACTACAGACGACTAGCACTGTATCAATACTACTACAGCCTTCAAGTAACAAATCTTGTTCTCAATCGAAATTACATACTGCATTTGTAAACAGCAGATTATCACAACCATATTACACAATGAACTGGTAAACAGCAGAAAAGATCACAACCATACCACAAAACAAAATGATGCGTTTGGTTGAGTGCTAACACCACAACCATCACCAATTCAGAACAGGCATGACAAGTAAGGTAAGCTAGAAATTAGCAACATAGCACAGAAGAGTCGCTTTACTGGCTAGCCAGCCACTTGTCTTCTCAAACTGacaatttaatgttttaaaaggaAAATGAGTATTTGACAGCGGAATTGCATGGTAACACAGTACAGAAGACTTGACAGTTGTCGAAGGACAACACGTTTCTattagccagctagctaacgttatggaCAGCACGAAGGCTAACCGGCGGCCTAGGACTGCAGATAGAACAAACTGTTCATTATTATACACATGACGGGTGAATCATAGTAATAACGATGTCTAACGCATCGTCTAAATACAAGGATTCGTCTCCTGATATTTGGAGACTCTAGTTTTTATTCTGTAACACAGATGCAAACAGATTTTATTCCAACAGAAACACGAAGGCAATGGTGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86832 lncRNA downstream 43775 26448363 ~ 26462070 (-) True G64852
TU86736 lncRNA downstream 122462 26323834 ~ 26383383 (-) True G64786
TU86737 lncRNA downstream 122462 26371634 ~ 26383383 (-) False G64786
TU86739 lncRNA downstream 177447 26324902 ~ 26328398 (-) True G64788
TU86710 lncRNA downstream 183909 26303824 ~ 26321936 (-) True G64768
XR_005639598.1 lncRNA upstream 68533 26579879 ~ 26580815 (-) True LOC120561456
XR_005639408.1 lncRNA upstream 87147 26598493 ~ 26613017 (-) True LOC120560048
TU86929 lncRNA upstream 146862 26658208 ~ 26658476 (-) True G64933
TU86930 lncRNA upstream 147952 26659298 ~ 26659547 (-) True G64934
TU86931 lncRNA upstream 150882 26662228 ~ 26663777 (-) True G64935
XM_039804410.1 mRNA downstream 6514 26496422 ~ 26499331 (-) True mrpl40
XM_039804493.1 mRNA downstream 91218 26412828 ~ 26414627 (-) True cldn5a
XM_039803646.1 mRNA downstream 149007 26343941 ~ 26356838 (-) True letm2
XM_039803668.1 mRNA downstream 163734 26338836 ~ 26342111 (-) False prnpb
XM_039803667.1 mRNA downstream 163734 26338836 ~ 26342111 (-) True prnpb
XM_039804314.1 mRNA upstream 1119 26512465 ~ 26514745 (-) True dynll1
XM_039804320.1 mRNA upstream 19996 26531342 ~ 26537704 (-) True polb
XM_039804318.1 mRNA upstream 26724 26538070 ~ 26541738 (-) False enkd1
XM_039804316.1 mRNA upstream 26724 26538070 ~ 26541738 (-) True enkd1
XM_039804319.1 mRNA upstream 26724 26538070 ~ 26541043 (-) False enkd1
TU86779 other downstream 58332 26440034 ~ 26447513 (-) True G64821
TU86475 other downstream 842475 25659575 ~ 25663370 (-) False mrps36
TU87012 other upstream 294326 26805672 ~ 26811283 (-) False LOC120560729
TU87050 other upstream 376661 26888007 ~ 26891271 (-) False sb:cb288
TU87051 other upstream 376661 26888007 ~ 26891271 (-) False sb:cb288
XR_005639600.1 other upstream 522504 27033850 ~ 27168438 (-) False arl15a
XR_005639601.1 other upstream 522563 27033909 ~ 27168438 (-) False arl15a

Expression Profile