RNA id: XM_039804320.1


Basic Information

Item Value
RNA id XM_039804320.1
length 2650
RNA type mRNA
GC content 0.37
exon number 14
gene id polb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26531342 ~ 26537704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCCACCCCCTCTACGTCCTTTGGTCATTGTTCAGCTTGAGCTAGCTAATGTGCTAGTTAGAGGCTAGCCTAATCTACAAATAGGTTTTAACTTTTCATGCATACATACAAGGCCGTTTAAGTTGAAAACGGACATTAAGAGAACTTGCCAAAGTAACAATGAGCAAGAGGAAAGCGCCACAGGAATCCCTAAATGAGGGAATAACAGACTTTCTTGTCGAGCTGGCCAATTACGAGAAAAACGTCAACAGGGCAATACACAAGTACAATGCTTACAGGAAAGCAGCATCTACCATCTCCAAGTACCCTAACAAAATCAAAAGTGGCGAAGAGGCCAAGAAACTGGATGGTGTTGGAGCTAAAATAGCTGAAAAGATTGATGAGTTCCTGCAAACTGGCAAACTACGGAAACTGGAAAAGATCCGTAACGATGACACCAGCTCATCCATCAATTTCCTTACCAGAGTCACTGGAATTGGCCCTGCTGCTGCCAGGAAGTTTTTTGAAGAAGGGGTGAAGACGTTAGAAGatTTGAAAAAGATTGAGCACAAGCTAAACCATCATCAACAGATTGGACTCAAGTACTTTGAGGAATTTGAGAAAAGGATTCCACGTGCTGAAATGGAACAGATGGAGACTCTTATTCTTGGAGAGTTGAAGGAGATCGATACAGAATATATTGGGACAATCTGTGGAAGCTACAGGAGAGGTGCAGCATCGAGTGGTGATATTGATATTTTGCTGACCCACCCAGACTACACCTCTCAGACTCAGAAGCAGCCCAAGCTCCTCCATGCCGTCGTCGAGCATTTGGAGTCTATTGGGTTTGTGACCGACACCCTGTCTAAAGGAGACACTAAGTTCATGGGAGTCTGCCAGTTGCAACCGAGTGATGAAGATGAGGAAGAATACCTTCACAGGCGTATTGATATTAGGTTAATTCCCAAGGACCAGTACTACTGTGGAgttctgtatttcactggaagtGATATCTTCAATAAAAACATGAGAACTCATGCTCTGGAGAAGGGCTTCACACTCAATGAGTACACCATTCGGCCAGTTGGGGTCACTGGTGTGGCAGGCGAGCCTCTGTTGGTGGATAGTGAGAGAGACATCTTTGAATACATTCACTACAAATACAGAGAGCCAAAGGACCGCAGCGAGTGAAGTAAAGGACAGCTTACAGTTACATCTGTATTTGAAGCTACAGCTTTCCTGCAAACGAGAAGCATGTGTACCAATTTGCATGATAGTATTCTATTCAACAATGTTATTGAAAAGAACTGTGAAAGTCATTTTAATTGTTGTTCTTGTCTTAAATTGAAACCATCCCCTTTAATGACATTTAACCTAAAATGTCATGCTCTGCACAAcaaaattattttgtttgtatctTCGGTTTAATTCTCCATGGTGTATCTTTGTGAAGGCCTGTGGGCTCCATATTTAAGCAAGTTTTTAAATCATGTTTAAAAACTTGACTAATTTATTTTTTGACcacaatttttcattttaaggATTCTACCATAATCTAAGAGGAACTCAAAGAACTAGCTTCTGTTACAGTTGTTTGTCAATCATGAATAATGAGGACCACTTTCATCAAGGCATTCTGCCTTGACAGTAGTGCCCTTTAACTCTTTGGCCAAGTTGTGCAAAGTGTTTTAATCTCAAATTGTTACACATTCAGACAGCACAGCTGTATTGCTTTATGttagtagtttaaaaaaaatctcattcaCCATTGGACTTTTAAGAGTGTGCGTTTTTAGACTTATAGTATTTCTCTTCTAAGTCGGGCAAACTAATTATTTGGAAAGAAGAAATGCAATGAGGCTAATTTGGCACAAAAAGATCATTGATTTGTTGCGATAAATAAGAAACATTTTCTCAGTTGTTAATTGATGTGTGAATATATGACTGTTACACTGGTAGACTTGAATAATCTTCGGTATGTGGTTGTGTGAAAATAATAACGTGTGTTAAGTCAGGACATAATTGTATCTTCAGTGCTTTTTAGGGGGGCATTTTGAAAGCAGTAGATTAAAGAAATTGGTAACTGAAATATTGCTACAGTATACCCGGGAGACAGATTTTAATCTCTAACACACAATATGAAGATTACGATTTGGATTCAGTTTTGTATGTGGATGATTGCAAACCTttctcaaaatataaaaacaataaaaaaaatggaaatgtttttgAATATCCAGCTGTTAACTTTGAGTATATATGAGTAAaataaatggataaagaaaTGATACCATGtcaaatttaatatattttgctaTGATTTGATCATtagacagactatactatgaaatATTTAATGGCATTTATACATAcacattttttacactttttttttttttcttctttcttttccatcTTCTTCCTTTCCGTCTATCTATAGTAAATCAATTAATAACACATCCATACTAGACTTAGTATATAGGTACCTCGAGACCTTTTCGtatccattcaatatattcatttGAAATAGTCTCTTAAAATTGCTCATTGTTGTACATGATTTCATCTCTTTACTGCAGCTGTTCCATACATTAACTCCTGTGGTTGTGATGCAGTGATATTTAGCATTTGTTCTTATAagtttcttttgaaatacaaaCGTTCCTCTTA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02330 POLB; DNA polymerase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86841 lncRNA downstream 19996 26505845 ~ 26511346 (-) True G64859
TU86842 lncRNA downstream 19996 26505845 ~ 26511346 (-) False G64859
TU86832 lncRNA downstream 69272 26448363 ~ 26462070 (-) True G64852
TU86737 lncRNA downstream 147959 26371634 ~ 26383383 (-) False G64786
TU86739 lncRNA downstream 202944 26324902 ~ 26328398 (-) True G64788
XR_005639598.1 lncRNA upstream 42175 26579879 ~ 26580815 (-) True LOC120561456
XR_005639408.1 lncRNA upstream 60789 26598493 ~ 26613017 (-) True LOC120560048
TU86929 lncRNA upstream 120504 26658208 ~ 26658476 (-) True G64933
TU86930 lncRNA upstream 121594 26659298 ~ 26659547 (-) True G64934
TU86931 lncRNA upstream 124524 26662228 ~ 26663777 (-) True G64935
XM_039804314.1 mRNA downstream 16597 26512465 ~ 26514745 (-) True dynll1
XM_039804410.1 mRNA downstream 32011 26496422 ~ 26499331 (-) True mrpl40
XM_039804493.1 mRNA downstream 116715 26412828 ~ 26414627 (-) True cldn5a
XM_039803646.1 mRNA downstream 174504 26343941 ~ 26356838 (-) True letm2
XM_039803668.1 mRNA downstream 189231 26338836 ~ 26342111 (-) False prnpb
XM_039804318.1 mRNA upstream 366 26538070 ~ 26541738 (-) False enkd1
XM_039804316.1 mRNA upstream 366 26538070 ~ 26541738 (-) True enkd1
XM_039804319.1 mRNA upstream 366 26538070 ~ 26541043 (-) False enkd1
XM_039804315.1 mRNA upstream 16028 26553732 ~ 26572090 (-) True ikbkb
XM_039802275.1 mRNA upstream 144792 26682496 ~ 26687397 (-) False snap29
TU86838 other downstream 16622 26469158 ~ 26514720 (-) False dynll1
TU86779 other downstream 83829 26440034 ~ 26447513 (-) True G64821
TU86475 other downstream 867972 25659575 ~ 25663370 (-) False mrps36
TU87012 other upstream 267968 26805672 ~ 26811283 (-) False LOC120560729
TU87050 other upstream 350303 26888007 ~ 26891271 (-) False sb:cb288
TU87051 other upstream 350303 26888007 ~ 26891271 (-) False sb:cb288
XR_005639600.1 other upstream 496146 27033850 ~ 27168438 (-) False arl15a
XR_005639601.1 other upstream 496205 27033909 ~ 27168438 (-) False arl15a

Expression Profile