RNA id: XM_039803564.1


Basic Information

Item Value
RNA id XM_039803564.1
length 1469
RNA type mRNA
GC content 0.45
exon number 4
gene id alkbh2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18970284 ~ 18973314 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCAATGGAACTGAAGTATTTCGCGCCAAAGAAAGTGACGAAACAGAGTTATGCTAATGAGCTGAGCGCTGTTCAAGACAAACTGCGGCTAGGTGTTTTCTACGGTTTGTGGTCTTAAACATCCTAAACTTAAGCTCCTCAGAGTTACACAGACAACAGGTTACTGCAATGGAAAAGTTTGTGAATAAAAGCTCCTGCATTAATGATGCAAAAAGTCCACAGAAGAAGATCAAACTGGAGAGTGATGAGAGGATCGAGAATGAGGATGAGGGAGGTGAGTTCTCTCATCCTGTTCCCTGGCAGAAAATAGAGGCAGAGGGACTAGACTGTGATTATGCTCTGCTGTTCTCCAAAGAAGAAGCACACCACCTTTTTAAACAGCTGGAGGAGGAAGTGGTGTACTCAACAGGAGAAGAAGCAAAGGTCCAGTTGTTTGGAAAGGTGCACAATATACCCAGAAAGCAGGCTACATATGGAGATGCAGGTCTCACCTACACTTATTCTGGGGTGACACGTTTAGCCTGCCCCTGGACTCAAACCTTGGAATATATTCGGGATGCTGTCACAAAAACAACTGGACAAACATTTAACTTTGTTCTGGTCAACAGGTACAAAGATGGGCAGGATCACATGGGTGAGCATCGTGACGATGAGAAGGAGCTGGACCCCCTCTGTCCCATCGCCTCTGTCTCTCTGGGAGCGCCACGAGACTTTATCTTCCGGCACAGAGATGCTCGGGGAAAACAGAGCCACCGACAGATCAAACCCGTGAAGCTGGAGCTTGCTCATGGAAGCCTGCTCCTTATGAACTCACCGACCAACACTTTTTGGTACCACAGCCTGCCTGTTCGCAAAAAGATTTCCTTGCCTCGTATCAACCTCACCTTTAGACGCATCCTACTGGGAAGAAAGAAATGACCAAGCGTGGATTATCACCTGGGCCAGTGGGGCCAGTGCCTAAGAAGCCTCTGACTAAGGGGCCCCAAGTCAAGTCACTTCTGTCCTTGGACACATGGTCAAATATCACAAATCTaaaatttgtttgtttatgttgcaGCTGAATCTGACTGACTAAATGACAGCACAAGGTGAAATAAGTGATGACTACTGGGATTCTGGAGAATGAGCACATTTTACAGTAATCAGTGGTTTAAAAATGACACTTCTGACTCACTCAAGCTCAAACTACCGCTTCAGTAAATTTCATCAGGTTAAGTTTAGTGAAGCACCTGGCAATGTTCCTGAAGAAAGGAACAATAAAATCAACAATTCGACCTCAACTCCCGAGTGCAGACCATGAAGGCTACATTTAGCATCTTGTGTTGCACTCAAAGGCACTCATGTACTTTGACAGAGCAATGGGGCACTGTATGCTGATTGCAAATTAATTTGATATATTGGAAAGAGAGTTGTGTGCTGTTCCAAAGAAGATGTacaaatttgaaaataaaagtattatggTCAATGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 106107 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 197806 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 222418 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 222762 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 228516 18737554 ~ 18742398 (+) False mvk
TU84163 lncRNA downstream 107766 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 111620 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 112600 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 178219 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 576096 19549410 ~ 19554906 (+) True G63005
XM_039803885.1 mRNA upstream 8106 18961837 ~ 18962808 (+) True LOC120560963
XM_039803883.1 mRNA upstream 9430 18953824 ~ 18961484 (+) True gatc
XM_039803884.1 mRNA upstream 11936 18958006 ~ 18958978 (+) True LOC120560962
XM_039803882.1 mRNA upstream 13573 18953825 ~ 18957341 (+) False gatc
XM_039803872.1 mRNA upstream 18772 18938052 ~ 18952142 (+) False sgsm1a
XM_039804001.1 mRNA downstream 12062 18985376 ~ 18992979 (+) True svopa
XM_039803653.1 mRNA downstream 28982 19002296 ~ 19022881 (+) False ssh1a
XM_039803654.1 mRNA downstream 28984 19002298 ~ 19022881 (+) False ssh1a
XM_039803655.1 mRNA downstream 35122 19008436 ~ 19022881 (+) True ssh1a
XM_039803656.1 mRNA downstream 35123 19008437 ~ 19022881 (+) False ssh1a
XR_005639481.1 other upstream 289753 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 551324 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 554908 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 639684 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 961596 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 461593 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1504498 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1504498 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1703103 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2615562 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile