RNA id: XM_039803885.1


Basic Information

Item Value
RNA id XM_039803885.1
length 879
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120560963
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18961837 ~ 18962808 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGTAAAGGGAGGTGTGGATCAGCTGAGGCAGACTGTATATAAACAGTGGTAGCTGAAGCCTCTGACAGCTGATCCTGAGCATAGTTGTTGTTCTGTCACCGTCTGAAGACCTCAAGTTCTCCGGAGGAATTTGCTAAAGTAAAGATCACAAGGCCACTTTGATCATGGACATAACCATCTGCATGCTGAACGGGACTTCCCGCACCCTGAGGGTGCACCCTGAGGACACAGTGGGGTCTCTGAAAATTCTCATCCAGGACAAACTAGGATTTCCCTCTGCAACGCAGAGGCTGGTGTTTGTGAACGGCATGAACACCGATCTCAGCGACGACTCGAGGCCCCTGAGCTCCTACGGCTTACGATCTGGCGCCAGGGTGTCCCTGCTGGTGACCCAGCCGGCGACCGTCCAGGTGTTCCTCAGAAACGAGAAGGGGAAGTTGAGCACATATGACATCCAACGCGACGAGACTGTGAGCCACTTCAGGAGCAGGGTCGAGAGCAGAGAGGGGATTCCGGTGAGCCAGCAGAGGCTCATTCACCAAGGCAGAGAGATGAACGAGGGCAGACTTTCCGAATACAATGTTGAAGCGCTGAGCACCATCGACCTGGGTCTCCGTCTAAGAGGAGGCTGAGGACACTTTCATATAGTTCATATTCTGTACATTCCTTTATTTAATCTAAATCAAGATCTGACAGCCTCAAATGCCATATTTcgtatttatttgtattttcatttggAAAAAAGCAATGCATTCCAAGAGTAATTCTGCCATATCTAAAAAATGATCATaacgttcacacacacacacaacacagtatgTTAGAATTGtattttgacatgttttaatatattaactggacactgtttaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 97030 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 188729 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 213341 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 213685 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 219439 18737554 ~ 18742398 (+) False mvk
TU84099 lncRNA downstream 3275 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 118272 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 122126 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 123106 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 188725 19151533 ~ 19153584 (+) True LOC120560789
XM_039803883.1 mRNA upstream 353 18953824 ~ 18961484 (+) True gatc
XM_039803884.1 mRNA upstream 2859 18958006 ~ 18958978 (+) True LOC120560962
XM_039803882.1 mRNA upstream 4496 18953825 ~ 18957341 (+) False gatc
XM_039803869.1 mRNA upstream 9695 18924315 ~ 18952142 (+) True sgsm1a
XM_039803562.1 mRNA downstream 7476 18970284 ~ 18973314 (+) False alkbh2
XM_039803563.1 mRNA downstream 7683 18970491 ~ 18973314 (+) True alkbh2
XM_039803561.1 mRNA downstream 8087 18970895 ~ 18973314 (+) False alkbh2
XM_039803564.1 mRNA downstream 8106 18970914 ~ 18973314 (+) False alkbh2
XM_039804001.1 mRNA downstream 22568 18985376 ~ 18992979 (+) True svopa
XR_005639481.1 other upstream 280676 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 542247 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 545831 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 630607 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 952519 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 472099 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1515004 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1515004 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1713609 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2626068 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile