RNA id: TU84005


Basic Information

Item Value
RNA id TU84005
length 354
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G62741
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18772755 ~ 18773108 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttattttggtaccatttcattgctaacatcagctatcaggttcccaaacatatgcataagctaatgttagtaaagtatcagtgctattgttattctgtatattgtacgagattaatagtgtaaggcaatatttacagcgtaggagagaagcaacAGAGGTTTGAAGCGTGCTGGAAATattgtggctgacccctcccaccccggcCACAAACTCTCtgagccactcccctctggcaggaggctgaggtccatcaggacctcAACCACACGCCAACAgttttttcccctccgccactagtcttatcaacaaggcccggaacccaccctgactctctccacacTCCACCTCTGGC

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83993 lncRNA upstream 24259 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 24603 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 30357 18737554 ~ 18742398 (+) False mvk
TU83911 lncRNA upstream 135534 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 155186 18617074 ~ 18617569 (+) True G62656
TU84019 lncRNA downstream 91467 18864575 ~ 18864807 (+) True G62755
TU84099 lncRNA downstream 192975 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 307972 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 311826 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 312806 19085914 ~ 19086862 (+) False G62836
XM_039803155.1 mRNA upstream 30356 18737518 ~ 18742399 (+) True mvk
XM_039802310.1 mRNA upstream 36280 18730216 ~ 18736475 (+) True aldh3b2
XM_039803256.1 mRNA downstream 21142 18794250 ~ 18841202 (+) True fam222a
XM_039802370.1 mRNA downstream 99174 18872282 ~ 18878090 (+) True LOC120560157
XM_039802369.1 mRNA downstream 123515 18896623 ~ 18904773 (+) True ankrd13a
XM_039803869.1 mRNA downstream 151207 18924315 ~ 18952142 (+) True sgsm1a
XM_039803870.1 mRNA downstream 151207 18924315 ~ 18952142 (+) False sgsm1a
XR_005639481.1 other upstream 91594 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 353165 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 356749 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 441525 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 763437 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 661799 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1704704 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1704704 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1903309 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2815768 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile