RNA id: XM_039802370.1


Basic Information

Item Value
RNA id XM_039802370.1
length 2341
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120560157
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18872282 ~ 18878090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGGGGGTAACTAGGAAGTGTATCGGTAGCTATGTAATACTAATAACATTGAATAGCGGCGGTTTTTCTGTGTAGAAATGCAAAACGTCGACTGTTTTTAACAAATATCAACAGAAAGCAATTAAGTTTACCATCGAAAGGGATCTATGGCTCTGCCGAGCCTCTCGGCCCATGTGCCCAGTCGGTCCCGGGTGCTGGCCGGACAGCTGGCCCGGCAGCGGGAGCAGGAGGCCCGGTGGCGGCAGCAGTGGGAGCTGCATGCTCAATACTTGAGAGAGCAGAGTGTCCGCAGCCAGAGACAGGCGGTGTGGAGCTCCCGTCAGTCCTTCCAGCAGAGTATGTCGGCATTCCATAAACAGAGACTGAAGGAGGAAAAGAAGGCCAGTCTTGAGCAGCGCAGGAATCGGCTAAGGGCCATGCTTCAAGAGGAGCAAGACCAGCTGGAGGCGGAACTCAGGGAAGTAGTTCCTGACAGGAACACATTGGCAAGTCAGCTGGTGCAAAAGACTGAAGAGCTTCGTACGGcaagagaggaaagaagaaaaaagcTTGCACAAGAGCTGCTGAAGGAGCACtggaagaaaaacaacacagagttGCGAGAGGTCGAGTCGGCATTACATAAAGATCATGTTGTCGGCAAATGGCAGGAGCAGATATCTGAGAAGAAACAGCAAGAACTGACAAAGCAAAAAGAGAAGGAACGCTTTGAAAATGAGTACGAGATAACCCGAAAAGAGGCTCTGGAGAGGATGAAGCAAGCGGAGGAGAAAAGGAACGTAGAGGAGCGGAAGAGGGCCGAGGAACTTCGCAAACAGATGGAAGAACTGAAGCTGAGGGAAGAGGAGGCAACTCACCTGAAGAAGGAGCAAGAGGCTCTGCTGGTCAAACAATGGGAGCTGGAGAAAAtagaggaggaaaggagaaagGTGGAAGAAAGGCGAAAGAAGTCTGAGATGGGGCATTTCTTAATCCGTCAATATCGCGCTCAGCTGAAGAGGAGAGCCCAGCAAGTGCAGGAGGAGCTGGAGGCTGACCGTAAGATCCTGGCAGCCTTGCTGGATGGACAGCAGGAGGACAGGAGGATAGAGACTGCGCGAAGGGAAAGAGCCATCGCTGATGCTGCCTGGATGAAACGTGTGATTGAAGAGCAGCTTCATTTGGAGCGGGAGAGGGAGGCTGAGTTCGACATCCTACACAGAGAAGAAGCTCAACATGTCTGGGAGAAACGAGAAGCACAgtgggagaaggagaggaaagcCAGAGAACGGCTCATGCAAGAGGTACTGTCAGGGAGACAGCAGCAGCTGGAGCTTAAGATGCAGAAGAACAGAGAGGCTCAAGGGGAGTCCCTGAGGAGACGAGAACAGCTGATCCAGGAgctggagagggagagggagaccaGACGCCAGGAGAAGGAGCAAGAAGAGTGCCGTAGGACCGCACGGATGCAAGAGATAAATGCTCAGgtGGAGCAGCAGCGCCAGGAGCAGTGGGAGGAGCAGTGCAGGatagagcaggaggaggaggaggacaggaaGGCTCTTCAAATCCAGGAGGAGGAGCTGAGGCGGGAGATGGAGAGGATGGCCAGGAAAGGATACCAGGAGAAGGTTCACAGCAGACCTCGATCAGCCTGGACATGAGCAACCTGCAAGACTGAACTCAAAACTGAATTGTGAGATGTTTATTTTTCTACCTGTAAATACCTTTTAAACATAGTTTCACGTGTTTTTCAAGTGTGTCAAGTTAGTGGTCATTGTAATTGTTCATACTGGCCTACCGTGATTCAAAGTAACTGATTGGGGACAAAAACCACAGTCCTCATTCAATGTAAACATGCATTTTAAACTTCATCAAACCAAGTagatcttttctttttaatattctCTCTGTTTGCTCTATTGCTACTGTGTTTTCTGGCTGAGCCACAGCGGAGAGATAGTAACACGAGATCATTTTGTACTAAAAAGATAACTTTAGAAGATACCTACTTGATTTGACTAACTCCtgaagcttcatatttactttgacaaactttaaaatgcatttttgcaCAGCTAGAGGGGTGTGAATTTTTACATTAGAGCTGTGTTGTGGAGGGGATCTTTTCACAGCCAGTATGAAGAGAATGAACAATGTTGTCAACCAATAACTCTTTAAATGTCCATATGGACATGCGAGTATAAAGCAAAGACATATATTGTACCATTTTGATGTTTAATGCTGGTTCGCATAAACGTATATGTAGAAAAGAATTGATTTCTTTGCACTTTTAGAGCTGTATATTTTCTATCCAGAATTTGTAGATGGTTTTCAATAAAACtattcaaaatcaaa

Function

GO: NA

KEGG:

id description
K16811 TCHP; trichoplein keratin filament-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 7475 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 99174 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 123786 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 124130 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 129884 18737554 ~ 18742398 (+) False mvk
TU84099 lncRNA downstream 87993 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 202990 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 206844 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 207824 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 273443 19151533 ~ 19153584 (+) True LOC120560789
XM_039803256.1 mRNA upstream 31080 18794250 ~ 18841202 (+) True fam222a
XM_039803155.1 mRNA upstream 129883 18737518 ~ 18742399 (+) True mvk
XM_039802310.1 mRNA upstream 135807 18730216 ~ 18736475 (+) True aldh3b2
XM_039802369.1 mRNA downstream 18533 18896623 ~ 18904773 (+) True ankrd13a
XM_039803869.1 mRNA downstream 46225 18924315 ~ 18952142 (+) True sgsm1a
XM_039803870.1 mRNA downstream 46225 18924315 ~ 18952142 (+) False sgsm1a
XM_039803871.1 mRNA downstream 46225 18924315 ~ 18948801 (+) False sgsm1a
XM_039803872.1 mRNA downstream 59962 18938052 ~ 18952142 (+) False sgsm1a
XR_005639481.1 other upstream 191121 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 452692 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 456276 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 541052 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 862964 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 556817 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1599722 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1599722 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1798327 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2710786 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile