RNA id: XM_039803871.1


Basic Information

Item Value
RNA id XM_039803871.1
length 3748
RNA type mRNA
GC content 0.52
exon number 22
gene id sgsm1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18924315 ~ 18952142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAGCAGCACTCAGCTGATGGGAGGGTTGCCGCTTGCAGACAGGAGACAGGATCCATGGCAACAAACATGGCAGAGGCAGAGACCCGTCAGAGGCTGCTGCGCACCGTCAAGAAGGAGGTGAAGCAGATTATGGAGGAAGCCGTCACCAGGAAATTTGTTCATGAAGACAGCAGCCATATTGTGTCCTTTTGTGCTGCAGTGGAGGCATGTGTTCTGCATGGGCTGAAACGGCGAGCAGCAGGCTTTCTGCGTAGCAACAAGATAGCTGCACTCTTCATGAAAGTGGGGAAGAGCTTCGTCCCAGCTGAGGAGCTATGTAGGAAGGCCCAGGAGCTCGAGCAGATCATCGAGACAAAACGAAGTCAAAGCCTGCAAAGTCAAGACAGCCTTCGCAAGATGCCCCGACTGCCCAGCCTCACCCAACAGGGAGTCAGGAACCTGTGGATCCGGACGGCTCTATTTGACAAGGTGCTGGACAAGATTGTCCTCTACCTGGTGGAGAACAGCAGTAAATACTACGAGAAAGAGGCTGTTCTAATGGACCCTGTGGACGGACCTATCCTTGCTTCTTTGTTAGTTGGACCTTGTGCTTTGGAGTACACTAAGATGAAGACAGCAGACCACTTCTGGACAGACCCGTCTGCTGACGAGTTGGTGCAAAGACATCGCATCCATGGGGGCCACTGCAGACAGGATTCTCCCACTAAGAGGCCTGCACTGTGTATCCAGAAGCGGCACTCCAGCAGCAGCATGGATGAACGCCCTTCCCCCTCACCATCAGCTCGTGAATATGTGGAGTCGCTGCATCAAAACAGCAGGGTGACCCTACTGTTTGGCAAAAACAATGTGCTTGTACAACCGAGGGACGACATGGAGGCTATCCCAGGTTACCTGTCTCTGCACCAGAATGCTGATCTCATGACCCTGAAATGGACACCGAACCAGCTCATGAATGGCTCTGTTGGAGACTTGGACTACGAACGCAGTGTATACTGGGACTATGCCATGACGATCCCTCTAGGGGAAATAGTTTACTTGCACTGTCATCAACAAGTTGACAGTGGGGGGACGGTGGTGCTGGTCAGTCAGGATGGGATCCAAAGACCTCCACTTCGCTTCCCCAGAGGAGGCCACTTGCTCCAGTTCCTCTCCTGCCTGGAGAACGGCCTGCTTCCCCACGGCCTGCTGGACCCTCCACTCTGGTCCCAGAGGGGAAAGGGGAAGGTGTTTCCCAAGCTGCGGAACAGGGTTCCTCAGGGATCTGGATCCTCAGACTCGGTCTCAGATAAGGAGGAGGACGAGGCCACAGACTATGTCTTCCGCATCCTCTTTCCAAACAGCCAGTCAGAGTTTGTGAGTCCTCCAGACTTGATGGATCAGGGAGCTACAATGTGGCATCCCACTCTCAGGAAGTCCTCGTGTTCCTCTTGTTCTCCGGGGAGCTTCTCTGATGGGGCGATGCCCAAGGGGTGCAACCATGAGAGGGCTCCTCTGAAGCTGCTGTGCGACAACATGAAGAATCAGATCATCTCTCGGGCTTTTTATGGCTGGTTAGCATACTGCCGTCACCTGTCCACTGTGCGTACACACCTGTCTGCTCTCGTCAATCACGCCATTGTGGCGCCCGACGTGCCTCGTGATGCCTGCAAAGGACTCACCACAGACGTGTGGCAGGCGTTTCTCCAGGACTGCACAGCATACGAGGAGAAGGAGCTGCTTCGTCTGGTCTACTTCGGTGGCGTGGACGCCTCGCTGCGTAAAGAGGTGTGGCCTTTCCTGCTGGGTCATTACCAGTTTGGAATGTCAGAAGCTGAGAGAAAGGAGGTGGATGAACAGGTCCGAGTGTTCTACCACCAGACCATGCGTGAGTGGCTCGGCTGCGAGGAGATTGTGCGCCAGCGGGAGAAGGAGCAGCATGCTGCAGCATTAGCGAAGTGTTCCTCTGGAGCGAGCATGGACAGCTCCAGTCAGAAGATGATCCACCACAACTCCACTGTCAGCAATGAGTCCCAGTCCCCCCAGAGCTCAGACAGGCAGAGTCTGGCTCGCCTGCAGAGTGactccagcagcagcacacaGTTCTTCACATCTTCCCATCCCTTCCCCTGGAGTAGCCTGCTTCCCTTTGGCTTGTTCTTTCAGGTGTTTGAGTCCGTAGAGGAGGTTGACCAAATCGAGACAGAGCCCAAGAGCGAAGAGGCCAAAGCGGTGCCAAAGATACCCAATGGAGCTCTGCAGAACGGGACAAGCTCTCCTGACTCCGGACATCCCTCCTCCCGTAACTTCTCAGTCACCTCCGGCCTGTCGGACGGCTCACTCACAGAGGACAGCGCTGCACCTGATACAATCCTGAGATCTGCAGCTGTCCCTCAGGCACCACAGAGCCCAGTCAAACCTGCAGGGGTAGAGAGTGAAGGTCTGACAGGGGAGATGGACGGCCAGGTGAAAGGTAAAGTTAAGAacaaggagggggaggaggaagaagaagaggaggaggagaaagcaCCTGATGTGACCAAAACTGCAGAAAATACCAAGACTGAGGGGCTGGTGAAGGCCAACAAAGACACAGGTCTGCAACCCAAAACACAAGAAGCAGTTGAGGAGTCTGGAGCAATTAAAAAAGAGGGGCCCAAGTGTGTAGATGAAGATGCACTGGCAGACATTAAAGGAATGGAACCTTTAGAGTCAGGGGTAATAGAAAAGCAAGTGCCCGATGAGGATACTATGATGGTATTAGAAGCTTCTGCTGCAAAATCAAAAGGAGAACTTGTTGAGCAAAGTCTTAAAAAAGAAGTAGAAGTGAGTATTGCGGAAACATCAATGCTTAAGAAAACAGAACCAAATGTGGAAAAGACAAAGGAAATGAATGAATCAGAGACAAGTAAAGCGCAAGAGGTTTTATTggcagaaaggagagaaaatatATCCGTTGATCCTGTGGCTCCCAAAGTTGAAAAGAACCTGGTTTTCTCAGGCAGACGCTCGTCTCAGACAGATGAGGACCAGGTCATGACTGAATCCGATGAGTCTCCCTCAGCCATAAAGATGGAGGACATCCCCAAAGCCAAAGTTTCCATGATGCCTTGGAGCAGGAAGGGACGATGTGAAGCGTTGTCTTTCGACGAGCAGGGAGAGCCCTGTCCGGAGGGCACAGAGCCCATCCTGTGTGAGGAGCCAGAGATGGAGAGTCTTTACCCTAACTTTGACTCTCTGGTGAGGTCTGAAGACATTAAGAATGAAGCAACCTCTCAAGAATCTGCTGGGAGTACCTTCTCTcaAGAGCTTTTGGACTTGTATACATTAAATCTGCATCGCATCGAAAAGGATGTCCAGCGCTGTGACCGGAACTATTGGTACTTCACTCCTGCCAACCTGGAGAAACTGCGCAACATCATGTGCAGCTATATCTGGAGGCACCTTGACATCGGTTACGTACAGGGCATGTGTGATCTTCTGGCTCCACTTCTAGTCATTCTGGATGATGAGGCCATGGCCTTCAGCTGTTTCACTGAGCTCATGAAGAGAATGAATCAAAACTTTCCACACGGAGGAGCTATGGATACTCACTTTGCCAACATGCGCTCTCTAATCCAGGTAACACAGTATCGGTGAAGTCTTTACACATGCTGTAGCAGTCAGGTATCGCTAAATCGATTCAATACCAACAAACACCCcacttttttacacttttccTTCACAACCCGTctcagtatttatttattacattttctctGATCTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 59508 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 151207 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 175819 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 176163 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 181917 18737554 ~ 18742398 (+) False mvk
TU84099 lncRNA downstream 17282 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 132279 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 136133 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 137113 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 202732 19151533 ~ 19153584 (+) True LOC120560789
XM_039802369.1 mRNA upstream 19542 18896623 ~ 18904773 (+) True ankrd13a
XM_039802370.1 mRNA upstream 46225 18872282 ~ 18878090 (+) True LOC120560157
XM_039803256.1 mRNA upstream 83113 18794250 ~ 18841202 (+) True fam222a
XM_039803155.1 mRNA upstream 181916 18737518 ~ 18742399 (+) True mvk
XM_039802312.1 mRNA upstream 187840 18732155 ~ 18736475 (+) False aldh3b2
XM_039803883.1 mRNA downstream 5023 18953824 ~ 18961484 (+) True gatc
XM_039803882.1 mRNA downstream 5024 18953825 ~ 18957341 (+) False gatc
XM_039803884.1 mRNA downstream 9205 18958006 ~ 18958978 (+) True LOC120560962
XM_039803885.1 mRNA downstream 13036 18961837 ~ 18962808 (+) True LOC120560963
XM_039803562.1 mRNA downstream 21483 18970284 ~ 18973314 (+) False alkbh2
XR_005639481.1 other upstream 243154 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 504725 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 508309 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 593085 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 914997 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 486106 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1529011 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1529011 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1727616 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2640075 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile