RNA id: TU198383


Basic Information

Item Value
RNA id TU198383
length 1451
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G167577
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18294983 ~ 18296555 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacgttAACCATCAGTAAAGTTCTATCTTACCAGGTCAAGTAGAAGGGACAAAGGACTGGTGGGGAGGTTGTGAGGATAAAAGTGACTGCACGTTGACAAATCCCtgaccacagtgacatcagtgTCAATATCGTTCCTCAAGTTGACAGTGAGGTCAGTTGGACACCTACCATGTATGGTAGTCTTTAAAACAAAGGAGTAGTGAGACATTCATGAAATAATGGCACAGTAATGACCACATAATAACACAGGCATAGGCATTCCATGACAACATGACTGAAATGTCCTAAACAATCTTACCATTATTCTATTGTGCTCCTCCTCAATGACAGGCACTAAGAGAGCAGAGATGATTCCTTTCTTTATGTTTACTATATTCTCAGGTTCGTCCTTTTCAGGATAGATGGAAACTTTGACCAACTGCTCCACCACAAAACTCAAGGGCACCTCTCCATGGCTGCCTTGAAGGACTCAGTTCCAGGAGCTGATGTGTAGACTGGCGGGCCCTGAGCATCAATGTCAGTCACTTCACTCAGTGCACACTCAGTGGTGTGCAGGACAAATTTGCATGTCTGAGGAACCTCAAGTTCTACCTAGATGAGGAAACAGGTGAAAATTGGAGAATTAGAAATCCCACCCATaatgacattaaatatattatgaaCATATTTTGTGACTAGGGTCTTCCTCAGTGATAAAGTCTTCAAGGTAATTACATAAGTACAGATATCTAGACTTACTCTTAAATTACAACAAACAGCTCAGATACTGACAAACACACCACAATACcataatgcatatttatttacaagaTGTAAAGTTTAGCTACTATATATTCTACTGTACTTTCTATCtattttcttttagaaatgtttgaaaaattATAGTTTTCATACCGTACATTATAACATTTTTCTTACCTTGCAGGATATTCTGGGCCCATTCTTGGTGTCAGCTGTTCCAGGCACTCCATTCGTGCTCTCAGCTGTGTActgataaatatattttctgaaGTTCCTAAATCGTGTTGCCActagatattaaaaataatggcaaaaaaataatgtcagttaaaccatttgtacattattattattattattattattattattattattattattattatttgctaaTCAAGAAGATACAACAGCACAATGTATGTTTTATGTACACAGATCAAGTTTGATCTACTAAAGTCAGTCATTAGTAACTGCATGTGATGTGTTTATGGGTTGTTTTGAGCCACTTCATAAACAGTTCCAAATCAGCATTTTGACCCGAGAACTTTGGACTGTTCCCTGACAGAGTGGCACCTCTGTGAGTCAATACATTCATCAATACACTGTACTCATAAACAACAGAGTACAAAGGTTAAGTGCTGATATCTTTTCAGTTTGACATGAACAAATCAATCCAAACTAAAATACCAAAGTCTGACTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198378 lncRNA downstream 23167 18271603 ~ 18271816 (-) True G167572
TU198005 lncRNA downstream 622210 17669650 ~ 17672773 (-) True G167250
TU197909 lncRNA downstream 670609 17615771 ~ 17624374 (-) False cmpk2
TU197897 lncRNA downstream 758208 17536419 ~ 17536775 (-) True G167152
XR_004579020.1 lncRNA downstream 828209 17452366 ~ 17466774 (-) True LOC117598352
TU198385 lncRNA upstream 5550 18302105 ~ 18303339 (-) True G167579
TU198386 lncRNA upstream 19923 18316478 ~ 18316699 (-) True G167580
TU198433 lncRNA upstream 102616 18399171 ~ 18399424 (-) True G167617
TU198434 lncRNA upstream 107998 18404553 ~ 18404775 (-) True G167618
TU198523 lncRNA upstream 161900 18458455 ~ 18458794 (-) True G167684
XM_026933766.2 mRNA downstream 4508 18287763 ~ 18290475 (-) True c10h1orf115
XM_026934300.2 mRNA downstream 45751 18243360 ~ 18249232 (-) True alkal2b
XM_026933738.2 mRNA downstream 64508 18191959 ~ 18230475 (-) True sh3yl1
XM_026934473.2 mRNA downstream 367933 17924721 ~ 17927050 (-) True id2a
XM_026934071.2 mRNA downstream 513931 17708618 ~ 17781052 (-) False asap2a
XM_026933898.2 mRNA upstream 78848 18375403 ~ 18382404 (-) True gdf7
XM_026934450.2 mRNA upstream 103156 18399711 ~ 18403969 (-) True yy1a
XM_034308094.1 mRNA upstream 118823 18415378 ~ 18437153 (-) True evla
XM_026933851.2 mRNA upstream 162917 18459472 ~ 18512607 (-) False eml1
XM_026933850.2 mRNA upstream 162917 18459472 ~ 18512607 (-) False eml1
XR_004578948.1 other downstream 1047164 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other downstream 1047826 17245939 ~ 17247157 (-) False htr1b
XR_003403899.1 other downstream 2278499 16016352 ~ 16016484 (-) True LOC113539022
XR_003403876.2 other downstream 2532265 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 2631488 15635086 ~ 15663495 (-) False ktn1
TU198371 other upstream 9188 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 9188 18305743 ~ 18316207 (-) False G167566
TU198375 other upstream 82342 18378897 ~ 18382455 (-) False gdf7
TU198855 other upstream 547248 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 665153 18961708 ~ 18966613 (-) True G168015

Expression Profile