RNA id: XM_026916773.2


Basic Information

Item Value
RNA id XM_026916773.2
length 6394
RNA type mRNA
GC content 0.51
exon number 17
gene id kcnh6a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4057751 ~ 4104754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcGAGAAAGATCTCGCTAATCCTGTCGCGAGCGCGCTCTTTAATCGCCGTGGCAACCGCTTTGCGCCGGAACTCGGTGACATTTCCCTGTCGCGCGACAACTCCCGTGCGTGcgtgcgtctctctctctctctctctctctctctttctttctctttctcttccttcctcaGCGATTTAACGCTGTTTTTTTCGCCAGCATGAGCTCCATTAACCTCATACATCCTCCCCTTGTTGGCTTGCCGTGAAGGAAGTGCACTTAAAGCACCAGGTGTCGGGAGATTTCGTCTCTTTCCGTCTTTGTCGTTCTTCTCGTCCGAATGTCAAAATGCCTGTTCGGCGAGGACACGTCGCTCTCCAGAACACCTATCTGGACACCATCATCCGCAAATTCGACGGTCAAAACCGAAAGTTCCTGATTGCCAATGCCCAGATGAAGAACTGTGGCATCATCTACTGCAATGAGGGCTTCTGCCAGATGTTCGGCTTCTCGCGGGCCGAGATCATGCAGCAGCCGTGCACGTGTCATTTCCTGGCAGGACCAGGCACCATGAAGAGCGCTCTGGCTCAGCTGGCCCAGGCTCTGCTCGGCTCCGAGGAGCGCAAGGTGGAGATCCTCTACTACTCCAAAGAAGggaCATGTCGGCCATGTTTGATAGATGTGATTCCAGTGAAGAACGAGGAAGGTGTGGTCATAATGTTCATCTTGAACTTCGAGGAACTGCTTGAGCCTGCGTTAAAAATGGGCTTCAGGCAGCGAGTCGCCCAGGGCTGGATAcgttcagCTCAGAAACGTAAACTGAGGCTGAGAATGCCGTCTTTACGAGTCACGCGGCAACCCGCTTACCCCAAAGACCCGTTTGAAGGAGTTGTTGTGGACTATCTACAGCCACCTGGTAAGGATGTGGCTCTAAAGGGTTTCCCTGGGCCATGTAAAGAGAGCTCACTGCAGTGTGAGACGCAGGCTCTGATCCATCAGGAGCACTCGTTCACCTCCCCTTCCTCCAGCCTGGAGCCCGGCGGCCCCCAggctccccacacacactcgcgcacacactcCCGAGAGAGTGTACACAGCCTGCGGCGTGCCTCCTCGCTGCATGACATCGACGCCATCAGGGACCAGTGCAGCGATGCCTTGAAGCCCAATAATGTGAACTCCACATCGGATTCGGATCTGATGCGGCATCGTGCCATTGGTCGGATCCCCCAGGTCACGCTGTCATTCGGGGCGGAGCGGGTCAGACCTCCCTCACCCACCGAGATCGAGATCATTGCCCCCAGCAAGATTAAAGACCGGACGCAGAATGTCTCCGAGAAGGTCACCCAGGTCACCCAGCACAGCGCTGAAAGAACACAGCAGGCATACGCAGCAAAGAGCAAATGTGAACTTTTTACCATTTCTACACATGCCCTTGGCAACATGgtgctGTCTCTGGGAGCCGATGTGCTGCCCGAGTACAAGCTGCAGGCGCCGCGCATCCACAAGTGGACGATCCTGCACTACAGCCCGTTCAAGGCCGTATGGGACTGGCTGATCCTGCTGCTCGTGCTCTACACAGCCGTGTTCACGCCGTACAGCGCCGCCTTCTTGCTCAGCGAGCACCAGGACGAAGGCCGAGCCGACTGCGGCTACACCTGCAACCCGCTCAACGTGGTGGACCTGGTGGTGGACGTCATGTTCATCATCGACATCATCATCAACTTCAGGACGACCTACGTGAACCGCAATGACGAGGTGGTCAGCCACCCGGGCCGTATCGCGCAGCACTACTTCAAGGGCTGGTTCCTGATCGACATTGTAGCAGCTATCCCCTTCGACCTGCTCATCTTCAGATCGGGCCCAGACGAGCCCCAAACCACCACTCTGATTGGCCTGCTGAAGACAGCACGGCTGCTGCGTTTGGTACGCGTGGCGCGGAAGCTGGACCGTTACTCGGAATACGGCGCGGCCGTCCTCTTCCTGCTCATGTGCACCTTCGCACTCATTGCCCACTGGCTGGCCTGCATCTGGTACGCCATCGGCAACGTGGAGCGCACGGGCTCTGCTCGTGGTGGTACCTTGAGGATTGGCTGGCTCGACAACCTTGCCGAGCAGATCGGCAAACACTATAACGACAGTGACGCCTTATCCGGACCCAGCATCAAGGACAAGTACGTCACTGCTCTGTATTTCACCTTCAGCAGCCTGACCAGCGTCGGCTTCGGCAACGTCTCACCAAACACCAACCCTGAGAAGATCTTCTCCATCTGCGTCATGCTCATCGGCTctctGATGTATGCCAGCATCTTCGGCAACGTGTCAGCTATAATCCAGCGTCTGTACTCGGGCACAGCTCGCTACCACACACAGATGCTGAGGGTGAAGGAGTTCATCCGCTTCCACCAGATTCCTGGAGGCCTGAGGCAGAGGCTGGAGGAGTATTTCCAACACGCCTGGTCCTACACCAACGGCATTGACATGAACGCGGTGCTGAAGGGTTTCCCTGAGTGTCTGCAGGCTGACATCTGTCTGCATCTGAACCGCACTCTGCTGCAGAACTGTAAGGCGTTCCGCGGGGCGAGTAAGGGCTGTTTACGAGCTCTGGCCATGCGCTTTAAAACCACACACGCTCCACCGGGAGACACGCTGGTGCACAGTGGAGACGTGCTCACTGCTCTCTACTTCATCTCCCGCGGCTCCATCGAGATCCTTCGAGACGATGTGGTCGTGGCCATCTTGGGTAAGAACGACATCTTCGGCGAGCCCATCAGTCTGTACGGGAGGCCTGGGAAATCGAGCGCTGATGTCAGGGCTCTGACCTACTGCGACCTGCACAAGATCCTGAGGGACGATCTGCTCGAGGTGCTCGACATGTACCCTGATTTTTCCGACAGCTTCTGGACCAACCTGGAGATCACCTTCAACCTCCGAGATGCAGACAGAATTATACAGCCAAACCCCAGCGAGGAGTCAGACTGCGGCTATAGACGACCACAACACAGGAGAAACTCTCTCCATCGCAACAGACCGgATGGCACGGATAGAGAAGAGTCTTATCCAGACCACTCGTGCGGCTCCATGGGGAACCACAGGGGGATGCTGTTGCACTCACACTGGGACGAGCTGTGCAACAGCATGAGCGCTGCCTCTTTGTCCAGTGAGGATGAGATCAAACACTCGGGGCCTGGACGGGGAGACGGGTACCCTCCAGAAGTGAAGGAATACGTCCCCACTGTGGTCAACCTCCTGCCCCCCACCACCGGAGAACGGGGAGCTCATCCCTATtcagGGCTGTATGGCTGCTGGTCCGAGCGCGGGCCGAGTCAGTACCCCGAGAGTCCGAGGCACTCGTCGACATCAGCACGCGCCTGCTATCATCATCACCAGCGCGGTGCGAATGCCGAGGAGAGACCGAGCGATCTTCATTCCCGCCTTGAACTGCTGCAGTCCCAGCTGAACAGacTGGAGACACGGATGACGGCTGACATTAACGTGATCCTGCAGCTGCTCCAGCGACAGATGGCTCAAGTGCCACCTGCTTACAGCTCTGTGTCTCCAGCCCCCGGGGTCCATCACACCGCTCCTCCACCTGACCTGTATGGGGCTCCGATTTTCCACCAAACAACACCTACCACTCCTACTGTACACATCAAAGAGCCAGCACACACCTCCAACAACAATTGTCCTGAGTCGGACAGCCCTAACTCAGAGTCTCGCGCGTCCCTGTCCAGCGGCGTCCACCTCACCATAGCCACAGACGACACCACGTCCATGTCTCCGGAGACAGAGACCAAACCGTCTGTCCCTGCAGATCTCAACATCCCTGAAAACCTCCATCCTCACCTCAGCCTGCGtttcccctccctccctgagcACCTGGAGAGCCCGAGCAGCCTGGAGGACACATCACAGATCCAGAGGCACCTGTCCGACCCTGGGCTCCCGGGCAGCTAGAGTCCGGAGCCGGCTGCACTCTCTTCTCATCTCCCGCCTGGGCCACGTGTGTCCAACATTAGCTCTACTGCAGGACAGATCGGACAGGACAGAGCTGCAGTCCTCctgctccacctcctcctcctcatcctgcTCCTTTCTTTACTTCTCAGATCATCTGGAGACTGTGAGCTTCAAACGAACTGTAAGCTGCTACTCATGGACACGGGTTAATCCGCGTCAAGTGGAGAGGGCCCGGTACAAGTTCCagacaaacacactcactcaaataCAAAGATCACGTGTGTATCCCAGATTGTACGTAGAACAAAGCACAAATCGAACACTGCACAGGTTTAGCTCTGCAGTGCGAAGGAAGTGGTAGTGCTATTTATTAGCATAGCACCAATCTGGAGCTGAGTATTGGGGTCATGGAAAGATAGGACATACAAGACAGTGTCTACATTTAGGAAACTTTCTTCTCACTGGGGTGATGGCTAATTCTAATTAACCACCTGATACCATTTACGAAGGCTGCTTGTGATTGTTTTATGACTGTTTTATGACTGCAGCGCTGTTTAATGAGGTAAATCTGTTGGGCTCAAATATGACTTAAACATCAGTGGCTAAAGAGAGACAGCGTATTCCAACAGccagttttctttaaaacactATTTATTAAACCATTTGGTGAACATCTAGCCTGTCCACTTACTTTATTATGAATTTATTGTCAAATCAAAAAaggaataatgaaattaaactagGATTATTCAGCATTTCACAGGTTCCAAATAAGTACATTAAGTTAATCTCAGCAGCCAAAAGTGAACGTAGGAAGCGTTGTTGCAAAGCGCACGTGAAACAGGAAGACGTGTGAAAAATTCGTTCCATTCTCTGTGAGATACTAAAGGaaacctccaccctgaaacGCATTAAATAAGTTTATATCGAAATGTTTGTGATGTGCTCAGTGGTTCTCGTGCAAATTGTTTTGGCAGatgcttcttttctcactcaccattttccagcgacGTTCaacgtcatattaatgagaaatccagtgcaGGAGTAGTGTAGACGTCAGAGCAAGCGCTGGattcaaagtcccagaatgcaatgcagctatacgatgGCAGAGAGTCGTCTCGGCATTgacggtggtattagcatgaaagttgaagctttggaagtttgagcagagtgtgtgGATGAgcaggtgagagagctggacagactgaggcactaaagtgccgctgcatcgctctctttaggtagagatgaaacTGGGCTAAATCCAAGtacaccactatcagcaggtggtcgaatggcattgtgggtaatgtaggaaaagTGTTAACctaagtgaaaatagaccaatgAAAGAAGATTAAACTAATAAAGTCAATGTAgaatttcattattaaacaacagtGGCTTAGACAGcgttgaagatcacatgttgaTTATAAAGTCATCCAGGGTGGAATCTTCCTTTAAAACAAAGCTCCCATTTACACGCTAATATCTGTGCACTTGTAGTGAATAGACTGCAACTTTTTCACAGTTCTGAACTGATAACCTCGCTAGTCGGTTCCTCACACTCAGCATTTATCAGTGTGAAAACAGATCTGTGTAAATATGTCCGAGCGCAATTCTGGTTCTCTTCTtaatctgggaaaaaaaagctcttcGTCACCATCACGGGTGCGTACGACCAAATATTATGCGTTTACAGTTGGGTAACAAAAGTATAATTGTTCACTATTTTTGGTTTAAAGCAGGAGAGAGCTTGCTAGCTTATTCTCCTAAATGTCTCTGAGGAGTTGTGGGATGAAACAAGATTTTCATGATGTTCTGGCTGTCACGTAATTCAGAGCGAAACCTCTTGGGTGTGAGTAGTAAAAATGAAAGACAGTGTGGTGGTGTAGGAGTTCATGCAGAAGTTCATGCAGTGACGTATTTAATGACGGAATTAATTCATGAGGGTGTGGTTGTGGTggtgggtgggggtggggggtgtgtgtgtgtggaggcagCTATAAATAACCACAGTAAAATTGATTAAGTGTGACACACTCAAGCATTTTGGGTGGATGTCAGACAGTAGCAGGAGCGGTGATGGCACAGATTTGTTACTTTCTAATCATTTAAGACATGATCTACGGTCAACCAATCCTGCCATAATGTGATTCAACAAACAAAATGggattaaacaaaataatcGGATCTATGCAGTAGTTAAATATGGAATCACAATGACGTTTTATGGAAGTCATTACACCACAATTGAGCTGAAAAACATATATGACATTGATTAACAATTTGTGCAGCAATTGTGCAACGGTCAAAAATGTTATacatacgctatatggccaaaagtatgtggacacctgaccatcacacccatatgtggttcttccccaaactgttaccacaaagttggaagcaaaaattgtgtagaatgtctttgtatgc

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04905 KCNH2, KV11.1; potassium voltage-gated channel Eag-related subfamily H member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242596 lncRNA upstream 174792 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 188008 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 189654 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 191413 3856054 ~ 3866338 (+) False LOC113528035
TU242579 lncRNA upstream 271173 3776604 ~ 3786578 (+) True G204815
TU242706 lncRNA downstream 1189 4105943 ~ 4107728 (+) True G204912
TU242762 lncRNA downstream 86983 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 250785 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 251564 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 254651 4359405 ~ 4360374 (+) True G205250
XM_026917237.2 mRNA upstream 13376 4034566 ~ 4044375 (+) True gfap
XM_034310183.1 mRNA upstream 27301 4029809 ~ 4030450 (+) True LOC117598989
XM_026916864.2 mRNA upstream 38358 3990758 ~ 4019393 (+) True map3k3
XM_026916875.2 mRNA upstream 74671 3966733 ~ 3983080 (+) False limd2
XM_026916871.2 mRNA upstream 97113 3959057 ~ 3960638 (+) True LOC113528358
XM_026916776.2 mRNA downstream 16100 4120854 ~ 4131475 (+) True ccdc47
XM_026916489.2 mRNA downstream 111161 4215915 ~ 4226045 (+) True moto
XM_026916490.2 mRNA downstream 111161 4215915 ~ 4226045 (+) False moto
XM_034310291.1 mRNA downstream 422839 4527593 ~ 4549478 (+) True ezh1
XM_026916627.2 mRNA downstream 521739 4626493 ~ 4670646 (+) True plekhh3
TU242670 other upstream 71467 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 71467 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 71467 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 71467 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 86501 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 608119 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 985444 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 985766 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 986078 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 986494 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile