RNA id: XM_026947029.2


Basic Information

Item Value
RNA id XM_026947029.2
length 5167
RNA type mRNA
GC content 0.45
exon number 19
gene id topaz1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22552724 ~ 22582102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTTCCAGGCGCGGTTAGCTGTTATTAAATTGATTTAAGTCAGACGTTATATTTAATTCGGCGGAGGAAAATGTTCAGCAAATCAATTATTCATCATAAGTGTGattttaataGGAAAGCTGGACTGAGGAAACACTTTGGTTCAATCTCAAGACTTGGTTCAGGGAGACAAGTCAAACGATCTGTTAAAAATGCATGCTGTGCCTTGTGTGGTGATGTAAAATATACCCCTCCTGCTCGTAAAAAAAACGCTCATGTCTATAAAGATGGATCAAGACGCCCGAGCCGGCCAAGAAGGCTGGAACGGACCATGGTTCATCCTGTGGCACGGGCTAAGATGACAACCAGGCTGATTATCTGGTTCAGGAGGCACCTCAAGGTGAAACTCTGTGATGTAGCCCATGTGTTTGATGTGACCTCACGTGACTTCTCGTGCATTTTGCCAGCGGTGCTGCTGCAAAAGAGGAAGCACAAAAGAGTGAAATGCTTCAGCAAAGAATTCAAGTCACTGATGCGCCTTGATTCTCAAGGCAGTGGGAACTGTGGGAAGTGGATTGGCAATCAATCCTGGGAGGTGTGTACTCCAACCAATAGCTGTGCTTCTCTCTCATCAGGTAATCAAGTTTTGGGATTTTCTGTTGGCGAGCGCATTTTGGATGTAGCAGAAGATATTGAGGGGTGGTCTGAGTCTTCGGATAAACAGATTTTGAGGATGCCAGACTGTGAGAGAATGAGACTGTCCTCTGTTGGGGGGACTGCATGTGTACCCTTAAAACTTGGGGAGGTTCAGCATTGTGTTGAGACTGCTGGTTATGGGGCAGAAGGGTCAAGAGAAGTTCAGGAGGTCAAAGCTGCTTCAGTACGCCGTGTGCCCCCTTTGTTACTACGACGTGTTCATGCCTGCAATGGCTTTTCTTCCTCTGAACTCTTTCAACATGTGGATTTAGCTGACAACTTTACAGTTAGAGAGGTAGACACAAATGACAGTTGTCTGGTGGAGAATGGATTGAATGATAGCTCAGTGGGGGATGCTAACTCCTGCCAGAGAACCACTGCTTATATGTTGCGGCCCCGCTTATCCTGTGCCCGCACTTACAGGTCTTGGCCCTTTCCCAGACACGGTCCTCCTTGTGAAATGAAGGGATCCATCCGTACTGGCCCTCGATGGATTGTGACCATGGAGGCTTCAGAAGGCACAAAAAATGTGAGCAACAACATGCAAATGGATTTCAATACAAGTTCTGAAGGCACAGTTGGGAAGAACACGAATGAAAACCTTATAGGTTTCGAACCACACGGTAGGAGTGTTGTGGTTCAAAATAGCCAAGGGCAACTACAATTTACAGCACAGAGTGACAGTGTTCTGGCCTCTCCAACTCTTGAGGAGACTTCAAAAGATCAATCAGAATTCCAGAAAAATCCAGGAAAAGTTTCGACATCAGATAGTAGTCAGGGGGAACTCTTCAAGCATTCCTGCAGTGTGTTTCAGCAGAACCCATCTAGTCTTGGTTTTGAACATGAAAATGATTCTCAGGCTATGGATATTCGTTCCCCAAAAGTCATGAATAGTGGCAAGCTAAATGTGATTCCTGCTGAGTCAATCAGTGCTGTGGACACCGAGTCTGATGATCTTGGTGATTCCTCCATGAATAGGACACAGAGTTCCAAGTCAAGTAAGTGTCTTCAGGATAATGAGAATGGTACAGAGGCTACAACCTTCCGTCTTCCAGATCCCCTTCCAGACCTCCAACAAAGTGCTTTTCAAACTTTGTCATGTATTGTACATTCCAGAGAAGAACCACAGACCCCCACTGTGAAGGTACCTTCCAGTGTGGAACCAAAGCACACTTCCTCAGTGATGGTACATCCCAAAGAGAAGCAGACATCTGATAAAACTGCTGACCAAAACACTTCATCCCCAACCTGCTTTGGAGGCAGTAGCTGGGACACACCCTTTAAATCCATGACAAACAGAGACTCCATTTCCTCTAGTGGGGAAGAAATCAGTAGCCCGTCTCCTGCCGAAAGACCTGAGGAATGTGACGCAGAATATTTATTGCTACAAGACGAGATGTGTGAGATTGGCAAGGCTAACAGAAGTCCTTCACCTCTTCCTGCCACAGAGGGCTCAGTGGTTACTGGTGACGACCTGGATGTTGTGCGAGCTTACGAGGATGATGCAATTGTGCTCGATGTCATTCAAGATGACCCAGATCTCTTTGGGGCCATTGTTATGGGTACATCAGGAAATTCAGCCTCAAAAGCCAATCCAGCTGCAGTTCAGAGGGGAAAGAACATGTGCATGCAGACTGACCAGGCAACCTTGGTCAGAAAACCCAACAGGATAGTCTGGGGCTTAGAGTCAGAAAGTCCCAGGAAAAATGTTCAGACTGCCGGTGATGTCCATTTGGAGAATCATGATGGTTTTTGCAGAGGGGAGGCTAATGAACTGGCTAAGGGCTCCAAAAGTCAGCCGACGTTTGGTATAAAGTGGCTCCCGGTTAACCCATTAGTCAAGCAAGAGCAGATGGTTCCAGATTGTAATAATAACCTGGATGAGAAAAAAAGTACCGATCTGAATGTCAACACAGTGAATACTGGATTGACATGGCTGGTGGATGATGCACGCAATAATGTTCATACTACTGCTGGGAAAGATATCAACGTTGTGAGACCATTAACATCTTCTTATTGCTGGTACTACTTCAGTGAGCATCACTCATGCTTGCGGAATGTGTGCTGGTTCCTTCATGTGCCCAGGGATGAGGAtgaaaagTTTTGCATGGATATTGTGCAGAAGTTCTGTCGTGTTGGAAGTCCTCCAATTGTCCAGCGAGCAGTGGAGGTTTTTGTTGCTTATTACAGGACCAATTCTCCTGGTGTGAGTTTCAGTCAGAACATCATGAACCAGTTGCTCTCATCTCTGCTCAACCTGGCACTGCTCAGGGACCTGGTGTCagttataaacacactcctcacacacaagAGAATGCCTCCTCTTGAATTTGTGATGGCACTTTATGAACATGTTCGGGATAGAGGAATCCTAAATTTTGTACCGGAGCTCATACTTCTCACGTCAAAGATTACAGAGGTGGGGGGTGTGTTCAGTGTTGAGCAGTGCGAGATGATGCAGCTTCATCTTGAGTCTTTGCACGTACCCAGACATCAAATGGACATTTTTTGCGCAGTAAAATGCAGggctCTGGCCACTAACCCACACACTGCTGAGCTGTCGGAGTTGGCCCAGGCTGTAGTCCGAGTGGAGCTCTGTAGGCAGCAAGAGGACTGGCCTGCTCTAGCACGCGTGTtctgcactgtgtgtggtgGTCGTCACAGTGCAGTAGAGCTGTCAAGGTTCTGCTGCTGTGTCACCATGGCGCTGCTGAAAGAGCCTAAAGACAAACTGACTCTGCCTTATGAACCATTCGCTGAGTCAGTTTGTCAGGAAATGCCGTCAGACGAGATGGTTAAAAGCTTTCTGGGACGAGTAGGAGTCTCACTGATGCTCAGCTATCACAGAACCCAAGACTGGACCaaggGTTTGAAGCTGTTGTGCGTGATGTCTAGATTGGAGCTGGAATTCACTATGCTCAAAGGGCTCTTTAGTAGTGAAAATGGAACATCTCGCTGTCAGCTTGTCACCATTGCAACGGAGTTCTTCCTTAACAGTGGCAGCATAGAAGGAGCACTGAATATCCTCAAAGCTAATGAATGGTTCGTGAGCTCAAGTGCATGGCCGTGTGAGCAGGAAGACGTACAGAACCGCAGGAGAGTACTGACTCTGCTTGCTGAGAAGACGTCATACAGAGACACATTGGAGGTCCTCACTAACCTGCCCGGTCTCAGACAGCCAATAGATGGTGTTCAGGCGGGTGAGTACAATACCATGTTTAATGCACACCTTCGAAGGTGTGTGATGAATCAGGTGTTGCCGGTTGCTGCAGACACACTCGAATTCATGCTGACTCAGGGAATCCCACTGGACTTGTCGGAACTTCAACATCTCATCCACAAACTAGGCAAACAGAACAGTTGGAGCCGTGCCAGGACTCTGTTCAAACGTGCTCATTCTGCAGGTTATTACTCTGGGGTTGTGTGTGAGAAGGATTGCTTGGCCCTGCCCTGTTGTCTCACAGAGATTGAGATGACTCTGGTATTTGAGATGTTCATTGCCTGCATCTGTACAAGCCTTGAAAATCCCAGTGACTCTTCCCAGCCACTGCTCATCACACTCAAACGgcgCACTGGCAGTGAGATGGCGATGGAGAGTGTGTATTTGGCAGCTGGATGCCGCTTGCTTTCAGCAGCACTGATACCGAACCCCAAACTGAGCATTCGTTACGCAGCTGTCAATCAGGAACAGGAGCAGCTTTTTAAACTGGACCGTGGCTCTGCAGCTAAGTGGCTTTCACATAACCGCAGCTGGGCTCAGGGGATGTGGGcaggctcacacacactcacacaagccAAAACAGCCAGAGACTCTGAAAGACCTTCCGAGGTAAACTGATTGTCACGACATATAGCTAATACAAACTACTGGTCCTGTAAACTGATCAGCAGtgaattctttaaaattaaGTTCTtagatatagaaaaataattggcttgtttaaaaatggACTGATTGTGTGCTTAAGAATAAAGGGCTGGTTGGATGTGTTTTTTCACTGTGAGAGGACTTGGccgatttttatatttttttttctggctctgctttttaaatttctttggCTATTGAATGTCTTATTTCATAATGTTAGTAATACAAACCCATCTAGCAAATGAGCCTCAACACTACACAGTTGATGCTGCATAAGAAACAGTtttgaaacagaaacagaaatcagTTTTTGGCACTTACTTTGCATATAtttggatttagatttagattatgatactttttttgtttcatgtgcAGCAGTTTGTTTTATAGTTAACTATGCAAATAGAAAAATGCCCATTTTAGAAATGATGGAAGAAAAGTCTGAGACGTGTGTGAAGTCTGCCTTTTGCAAATTTccaatgtgtgcagtttcagTTTGTTCCATTTTCAAATAttgttgtaaatatttgaaaataaataagtgaaataatTCATTCTTGTGCATGTCAAAGACATAGTTATGGAGACATCTAAACGGGGTTACATAGCAGTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255043 lncRNA downstream 9651 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA downstream 45768 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA downstream 72709 22477976 ~ 22480922 (-) True LOC117598972
TU255027 lncRNA downstream 155880 22390356 ~ 22397751 (-) True G215249
TU255019 lncRNA downstream 209114 22339042 ~ 22344517 (-) False LOC117598814
TU255283 lncRNA upstream 74440 22656542 ~ 22704479 (-) False smim13
TU255306 lncRNA upstream 151627 22733729 ~ 22734095 (-) True G215507
TU255308 lncRNA upstream 155174 22737276 ~ 22737479 (-) True G215509
TU255292 lncRNA upstream 172458 22754560 ~ 22755107 (-) True G215494
TU255279 lncRNA upstream 187535 22769637 ~ 22778819 (-) False cltb
XM_034310140.1 mRNA downstream 133721 22399685 ~ 22419910 (-) False LOC117598969
XM_034309813.1 mRNA downstream 207852 22326726 ~ 22345779 (-) True LOC117598814
XM_026936343.2 mRNA downstream 939756 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 939756 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 1173415 21368754 ~ 21380216 (-) True srp72
XM_026947008.2 mRNA upstream 47779 22629881 ~ 22644263 (-) True trak1b
XM_034309656.1 mRNA upstream 47779 22629881 ~ 22641838 (-) False trak1b
XM_034309657.1 mRNA upstream 47779 22629881 ~ 22641597 (-) False trak1b
XM_034309658.1 mRNA upstream 47779 22629881 ~ 22636621 (-) False trak1b
XM_026947051.2 mRNA upstream 79458 22661560 ~ 22676748 (-) True LOC113546927
XR_004579404.1 other downstream 133721 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 133721 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 189366 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 231898 22321174 ~ 22321733 (-) True LOC117598975
LOC117598862 other downstream 233356 22319544 ~ 22320275 (-) True LOC117598862
TU255282 other upstream 116311 22698413 ~ 22704479 (-) False smim13
TU255280 other upstream 187535 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 554824 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 742383 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1958733 24540835 ~ 24588450 (-) False usp7

Expression Profile