RNA id: TU1807


Basic Information

Item Value
RNA id TU1807
length 1428
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G1469
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2731416 ~ 2733341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGAGTTGACAAGCTAGCATTTATTCTTTCTGTTGTTCAGTGGTTGGGGTGACAGTGCAGGGTTCGTGTGTACTACTGCAGGGTCAGTGGAACCCTTTAagaacaatattaaaattaaaacacaaattgACGTTTTGTTTAATGAAACTGCTGTGTACCATTAAATACAAGACAGACCAAAGCAGAGGATAAGAGATGAGATGTAAAAAATAAGTACAAACATGGCCATTCGTGATAAGGCAGAACCTTTCATATACCTTTAATTTCAACGGCATCGCTGATTCTGACAATAGCatcatttttcaaattcttCTCAAACTCTCTTTTACAACTTGTGGAAGAAATCCCAACTTAAACAACACacagttttgcattttgtgaTGAGATGCTGCCCTCTTTCTACTTTTCCCCTTTgttcttataaataaatagctcttgagtctattaattaattatgaaataGATATGTTGTTAAGCAGATGGCTGTTAAATTAACACTGCAAAACAGCCTTTATTCAACAGTCTATCTACAGTATTCACTTCCCTGGGGCACTGCTGAAACCAAACCAGACTTCTGGACAAGAGATAGGAGCAAAATTAAACCGATATTTCAATTCAACAGTAAAGaaaattctattaaaaaatCACCATAATAATTAAGCACATTAGAAATAACTCAGTCCTCTGCAATGCCTGCTGTGCTGAGATACACACATTCAAGTGACAAGGAACTCAAATGCATTCTGGAAACTACACAGGAGGGTTTCATCAGTTATAAGTGAAAGATTGCAGGAAGGCCTGGCCCTCTCACACTGTACACCACTCCATAGCCCTCAAACTCcagagcttttatttatttatttattttttatcaaaagTAACAAGTTAACACAGgctctgaaaaacaaaactaaaaaaaaaaaaaaactgcatcttTGGTGCTATTGCTCCAAGGTTCACTCAGCTTACCACTTCATCTTATGTTACATTACTGCTGTTGTGGATTAGATAGAATTGTACCACAAACAGAAGGCTGCCATCTTGATGGATAGGACAGCTCACCTGCCTTACGAACACATTCaagtacaaaagaaaaaaaaaaaaagtccagaatCATTAGATTAAAATAGAGCTCCCTGTCCAGGCCCTCTCTTTCAACTCCCTCAGTCAGATCACACAGCCTCCTCGTCGTCATGGCAATCACGGGGTCAAAGCCTCCAATCAAATATTTTCAGGTGGTCAGATGCCAGACGactggtttgtttttcttcttgatTGGTGGATTACTGGTTTCATTTGTCATTGTCTATTTTGCCTTGTTTGCcatttttttaccattttccaTTCAACAACTAAACTGActttttattcagtttcttgccttttttcaggaccagtttattttttatgtatccTCTCTTCCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1797 lncRNA downstream 25580 2702814 ~ 2705836 (-) True G1465
TU1744 lncRNA downstream 75117 2613257 ~ 2656299 (-) True G1421
TU1749 lncRNA downstream 91713 2590485 ~ 2639703 (-) False G1425
TU1748 lncRNA downstream 101177 2624083 ~ 2630239 (-) True G1425
TU1745 lncRNA downstream 177858 2548778 ~ 2553558 (-) True G1422
TU1829 lncRNA upstream 38446 2771787 ~ 2820355 (-) True G1490
TU1831 lncRNA upstream 43066 2776407 ~ 2778255 (-) True G1492
TU1926 lncRNA upstream 245521 2978862 ~ 2979141 (-) True G1576
TU1930 lncRNA upstream 270454 3003795 ~ 3004003 (-) True G1580
TU1933 lncRNA upstream 314625 3047966 ~ 3048344 (-) True G1583
XM_026913451.2 mRNA downstream 279897 2445729 ~ 2451519 (-) True hint3
XM_026913455.2 mRNA downstream 292701 2424751 ~ 2438715 (-) True trmt11
XM_026914141.2 mRNA downstream 331159 2388648 ~ 2400257 (-) True cenpw
XM_026914403.2 mRNA downstream 404877 2313109 ~ 2326539 (-) True rspo3
XM_026913416.2 mRNA downstream 432350 2294849 ~ 2299066 (-) True cnih4
XM_026913989.2 mRNA upstream 1170 2734511 ~ 2775211 (-) True osbpl10b
XM_034310776.1 mRNA upstream 1170 2734511 ~ 2775210 (-) False osbpl10b
XM_026913990.2 mRNA upstream 1170 2734511 ~ 2774807 (-) False osbpl10b
XM_034310831.1 mRNA upstream 1170 2734511 ~ 2774684 (-) False osbpl10b
XM_026913834.2 mRNA upstream 54851 2788192 ~ 2790721 (-) True kiaa1143
XR_004578455.1 other downstream 279896 2440846 ~ 2451520 (-) False hint3
XR_004578099.1 other downstream 2053616 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 2132250 598781 ~ 599166 (-) True G502
TU238 other downstream 2565347 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 2569350 158802 ~ 162066 (-) False ptpn6
TU1883 other upstream 184987 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 510494 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 924839 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 940905 3674246 ~ 3675836 (-) True G2020
XR_003402808.2 other upstream 1236051 3969392 ~ 3983491 (-) False nagpa

Expression Profile