RNA id: TU1883


Basic Information

Item Value
RNA id TU1883
length 436
RNA type TUCP
GC content 0.38
exon number 5
gene id eny2
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2918223 ~ 2919847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGGACCAAAATAAGGTAGGGACCGTTGGCCACAAGGTCCTCTAGCATCCGTTAATGAAAACATTATGTTAATTTCTGTAACAGTTTAGGCTGAGTGATGAGTAAAGAGTTACAGATGAGGGCTGCAATTAACCAGAAGTTGATTGAAATGGGGGAGAGGGAGCGGTTAAAAGAGCTGCTCAGAGCCAAGCTGATTGAGTGTGGCTGGAGAGATCAGTTAAAAGCACACTGTAAAGAAGTCATAAAGGAAAAGGGGATTGAGAATGTCACAGTAGAAGACTTGGTGGCTGGAGTCACTCCTAAAGGAAGAGCGTTGGTGCCTGACAGTGTAAAGAAGGAGCTTCTGCAGAGAATAAGGGCCTTCTTAGCTCAACATTCTACATGATGGACAGGATACTGGACTCTCTGCCAACTGAAATGCCACATCAGCTGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829 lncRNA downstream 97973 2771787 ~ 2820355 (-) True G1490
TU1831 lncRNA downstream 140073 2776407 ~ 2778255 (-) True G1492
TU1807 lncRNA downstream 184987 2731416 ~ 2733341 (-) True G1469
TU1797 lncRNA downstream 212492 2702814 ~ 2705836 (-) True G1465
TU1744 lncRNA downstream 262029 2613257 ~ 2656299 (-) True G1421
TU1926 lncRNA upstream 59051 2978862 ~ 2979141 (-) True G1576
TU1930 lncRNA upstream 83984 3003795 ~ 3004003 (-) True G1580
TU1933 lncRNA upstream 128155 3047966 ~ 3048344 (-) True G1583
TU1944 lncRNA upstream 165116 3084927 ~ 3085344 (-) True G1594
TU2074 lncRNA upstream 257752 3177563 ~ 3177769 (-) True G1708
XM_026913368.2 mRNA downstream 83430 2823389 ~ 2834898 (-) True sybu
XM_026913367.2 mRNA downstream 83437 2823389 ~ 2834891 (-) False sybu
XM_026913369.2 mRNA downstream 83439 2823389 ~ 2834889 (-) False sybu
XM_026913371.2 mRNA downstream 91499 2823389 ~ 2826829 (-) False sybu
XM_026913794.2 mRNA downstream 113409 2795611 ~ 2804919 (-) False zdhhc3a
XM_034299040.1 mRNA upstream 39446 2959257 ~ 2964620 (-) True trhra
XM_026914368.2 mRNA upstream 85486 3005297 ~ 3036104 (-) True emc2
XM_026913366.2 mRNA upstream 438414 3358225 ~ 3360489 (-) True tpbgb
XM_026914389.2 mRNA upstream 538006 3457817 ~ 3508921 (-) False bckdhb
XM_026914388.2 mRNA upstream 538006 3457817 ~ 3508921 (-) True bckdhb
XR_004578455.1 other downstream 466808 2440846 ~ 2451520 (-) False hint3
XR_004578099.1 other downstream 2240528 677401 ~ 677800 (-) True LOC117597201
TU694 other downstream 2319162 598781 ~ 599166 (-) True G502
TU238 other downstream 2752259 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 2756262 158802 ~ 162066 (-) False ptpn6
TU2085 other upstream 324024 3243835 ~ 3281162 (-) True G1718
TU2447 other upstream 738369 3658180 ~ 3659319 (-) True G2011
TU2456 other upstream 754435 3674246 ~ 3675836 (-) True G2020
XR_003402808.2 other upstream 1049581 3969392 ~ 3983491 (-) False nagpa
trnas-aga other upstream 1149098 4068909 ~ 4068990 (-) True trnas-aga

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020114 True 770 mRNA 0.40 4 NC_007127.7 38940786 ~ 38943681 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_01341525_01342959.mRNA True 1194 mRNA 0.36 5 CI01000016 1341347 ~ 1343558 (-)
tiger barb (Puntius tetrazona) TU170138 False 552 TUCP 0.44 5 NC_056714.1 22087649 ~ 22089054 (-)
mexican tetra (Astyanax mexicanus) TU123814 False 560 TUCP 0.43 5 NC_035906.1 19648674 ~ 19651065 (-)