RNA id: TCONS_00000062


Basic Information

Item Value
RNA id TCONS_00000062
length 1060
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_000033
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1599979 ~ 1614500 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTTAGAGGCGCATTGGTGCATGAAAATTGGCAGGCATCTGAAGACAATATACTCATTTAGGTATCTGTAGAATCTGCTTTGCTGCACGGTCTCACCTTTAGGTTTCTGAGATGTTTAGGGTGCTGAAAGTATTGACCACAGTTGCTCTGCTGACTGTCGCTTCAATCGTGGATGCTGCTCCACTGATGCCCGGAGAACCAGATGCCTTTAAGGAACCAGCTGATggagatCCAGGAAGAACTGAagcaaacactgaaataaatacagCACTAATGAAGCAACTGAGGAGCAAAACACTGACGACATTTCCTGACGGAGATGGAAAAACTGTAGCGACGCGAGCATTAGATGAAATAATCACAGCAACAAGCAGCCCAAATAACAGAGACAAGAGCTTAAACACAGGAATCAGTAATCTATTAAATACACTGACAATGCTCTCCGATGGACACGAGGAGACCGAAGGCCATGATGAATCTCCCGAAAACAAAGAACTGATGGAGATTACAGAAAAATCTGATCCTGGTCCTCCAGAAGAGCTGCTGAAGATGCTGAGTGCACTTGAAGAGCTGCACAAGTTCATCAACAGCCACCGGATCACCATCATTACCAGAGGAAACAGCAATGGACGAAGTACAGGGAAGAAGAACAAAATGGTAGTGACGGATGGAAACCTCAAATCCACCACAGCGACCACTATAGACAGCGGTGGCATCTCACCCAAAGCCAGCACTGACCAAATGGACCCCAAACTTAATGGAAAATCCTTTAAAAAGTCTCTTCCGTCAACCAAGAAAACCAACAAGAGAGTGTGCTTCTGGAAGTACTGCTCTCAGAACTGACCCTCGCTGATTTCTGCAAACGGCCTGCAACAAATCCTGTTCTCAAACACGGATGCTTAAACTCTTCCCAGCGGAGCCTCAATAACACGACTGACCCTCTGCCCTGTGACGTGTGTACTGTACCTTTAACTATGTGCACCAAATTATGTTAACTTTCCATCTTGCAGCGTCTTCCTTGTTGCAAGCTCCAATAAAACATGACACTGCATGCAAAAA

Function

GO:

id name namespace
GO:0008217 regulation of blood pressure biological_process
GO:0097746 blood vessel diameter maintenance biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110718-3 Predicted to enable hormone activity. Predicted to act upstream of or within blood vessel diameter maintenance and regulation of blood pressure. Predicted to be located in extracellular region. Is expressed in nervous system.

Ensembl:

ensembl_id ENSDART00000097626

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002807 lncRNA upstream 21728 1571847 ~ 1578251 (+) False XLOC_000032
TCONS_00002806 lncRNA upstream 23589 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00003011 lncRNA upstream 239148 1358897 ~ 1360831 (+) True XLOC_000031
TCONS_00003010 lncRNA upstream 239528 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00003009 lncRNA upstream 257742 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00003014 lncRNA downstream 2703 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003013 lncRNA downstream 2703 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003012 lncRNA downstream 2703 1617203 ~ 1619314 (+) True XLOC_000034
TCONS_00000064 lncRNA downstream 75547 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00000065 lncRNA downstream 90630 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000059 mRNA upstream 629028 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 991732 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 991924 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 996582 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 1008648 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000063 mRNA downstream 75275 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 97640 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 174857 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 190794 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000075 mRNA downstream 223664 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000061 other upstream 24416 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000060 other upstream 381174 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000053 other upstream 1023458 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 1053762 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 1084657 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000067 other downstream 97653 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 103197 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 104111 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other downstream 104707 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000094 other downstream 576200 2190700 ~ 2214397 (+) False XLOC_000046

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04741460_04746667.mRNA True 1040 mRNA 0.45 5 CI01000299 4741447 ~ 4746667 (-)