RNA id: XM_034307218.1


Basic Information

Item Value
RNA id XM_034307218.1
length 4058
RNA type mRNA
GC content 0.42
exon number 5
gene id tmem79b
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19613670 ~ 19621043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataaaaacacacacactccgaggCACCTGGACACACCTGAACTTCCACTTCCGGAAAATTCCTAAACAAACCCCGGAGCACGTTTCGCTGGGAAAACCGACCAAACCTTCAGGAAATCTATGCTACTGAATTTTTGATGTCTGAGGACCTTTCGTCTGACTCTGTGCCAATGGTCAAACCTCCTCTAGTTCTGAAACCAGAACCCTCTGTTCCTGActgtgaaagagaaaagaagataaATACAGACATGAAAAGAACAGGGGAAAAGATCAGTGGTGCTGATATGGAGCCAAGCACACTGCCCTGGCCTGGAGACAAGGCTGATCAATTTGGCAAGATAGAAAAAGCAGCATCTGATCTCAAACTAGAGCAGAGTGAAATGGATCTTATAGGAGAGAAGGGGAGTGAGAGATCAGATAGCGGGTCCCTCCGTGCAGGAGTAAGCAggactgagagtgagagagagtttgGTGGGCGAGAAAAGCGAGCAACGTGCGAAGACTGCGTGGAGGGAAAGCAGCCTGAGCTAAGAGAGAAGGTTCCACACTTGGAGATTGAGGTGGAGGAGATGAACAGTATGCCGGAGAAAGCAGCAGGGGTCTTCAGTCCTAGTGTAAGCATCCTGCGCTCCACCAGCATGCCTGAACCACCCAGGCGCAGGTCAGAAATGTGGAAGGAAGAGAATCAGGCCTTCCTTGGGAATCCAGACATACTTCCAGATGAATACTCATACCATGAGTATCCCAGACAGAACAACTTGCAAATCTGTTCATGTGCTGGGACATACCGTGATGTGCTGAAAATGGGCGTATCTATATTCATGTCAGCTCTGATCTTCCCTGTCCTGGTTTGGGGTGGCCACACTTTCTTACCCTTTGATGCGCCTCTGCTGGATAGTGCCCCCTTAAGGCTGGTCTACACACTGCGCTGTTCAGTCTTTGCAGTCATACCGATTGCCCTGGGTGTGCTGGTGCTGGGTGTGTCCCGTGTACGCTACCGTTCTCTGAAACCGCACTGTGACGGAGAGGTTGAAGAGGTGAACATCCACCGCCGCTATGTTGATGACTCTGTTTCACTCTTTCTCCTGTACTTCCTTCAGCTGGGTGTCATGGCTGCTTATCTGAACCAGAACCTTCTCAAACTGGTCCCTCTCCTCACCATCATCTTTGCCATTGGCAGGCTGGTGTACTGGATTGCAGCAGCATGGGGCAGCAGCTTGAGGGGTTTTGGGTTCGGATTCTCCTTTTTGCCTATGCTGACCATGTTGGTGGCCAACCTGTACTTCATCTTCATGGCTGATTCTGCTGGCTCAATCTTTGCCCAGGATGACATGGAACCACCCAACCCTCCTCAGGAGTACAGGCAGAGGTTCTGGGGATAGAGTGAAATCTGATGCCccaacactaaaaaaaaaaaaaaagagagagagagtttcttTATCTGTGCCTTTGTTTACTGTCTCTCATTTTTAGTAGCTTCACAGAACATGGATCAAATGCCTACATACATGGAAGAGGTAGTActccagttttaaaaaaaaaatcttactcaGAGGAAAATACATACCAATTGTGGATATGATGGACCTCACGCTCTGATTTTGCCATTTAGCTTAGAATGATTGTTACAACATTCCACACCTGCGGTTTGGCTTGACAAATTATATGGGGTAAAGGGGGGAAACTATATATGGCTGCCTGCCTTATTTAAGACACATAGTAAGAAGATACCCTACAGTGATGGATCGGTCTATGATGTTATAGTCACGTGAATAATAGTGCTAATGACTATAATTTCAGGGTCTAATCAAGCAAGATTTAAATGCTTTAGTGACAGCAGGTTGCTTAAAATAAATGGCTTATGAATGTAACACAAGCAGATgtggaaagatttttttcacaGACTTAACTGTTTCTTTCTAATGCGAAAAGAACATactgaatttttcttttcttgttgaatggagtttaaaaatatgttgaaataacCTTGTAGCATGTTTGTGCAGTTTGTGTGCAATGTACCTGAAGTTCAATTTTTTGATTAAAAGTGGTAGtacagaaaaggagaaagggGAAATAATTGTCTTCCATTCCTTAGTACTTATTTCAATACAGATTTTCCCGTGAATGTTAGATTGGGAAGATGGGTATGGATTATCTAAATGTGTGGGGGGAAAGGGGGTGTCAAGCTGGCAGACAAGGACAGaacaaatgtgttaaaatatcTTAAGAATTTGAATGTTATTTTTGCATGCTTTTGTATTAACTATTGTAAATAAGATATAACAAATGTCCTTTTGTTTCCTCTAAAATCATGTCTTTTATATCCTAAAACACTGATAACGGAAGACAAGATATGCAGGAGTTTAGTGGGTCTGTGCATATGATTGAGGAGAGGACTGGCAGGGTAGTTTCCTTCAGAACTAATGAAGTTTTCCCATTTGCTTGATTTATTGCTGAGTACTAATAGCAAAACgatatataatatgatatagcCTATAAAAGGTCCCCTGCTCCATCACACTCGTTCTCTGGCCATTCTCACCAACCTGAGAGATGCCATGCTCTGGCAGTCCTCCGCTTGTAGAACCACGGTTACATATGTAAGCTTCTGTTTTACTTCATTTCGTTTCTGACTGCCAGGGCAGTTTCTTTTAGATGTAGCTGAGGCCGTGTATCAAAGTTGTCACAAGGATTTATAATACATAGGTAATAAATAAGGATCACAAggatttataatacattataataaatagtgcAAGCTGCCAGACATAAGAGACTGATAAGTGGTTCAAATACCAGACTAAGAATCACTCAGGTGAGGTTCAGCATTCCCAGTTTTACCAGTATGTTTGCTGTTGCCAGATGTAGAAAGTCTATATATGGGCATTGTGTGATAATTGTGTGATAATGTAATTTTCTGACTGCTTTTGTGATCAAGACAGCTTTTCATCTATCAGAAAAGCTTGCATACCCCATAAGATTCATTCCTGTGAGCTGCACAGTTTGCACATGTGCTATGGCTCTTCTTGTACTTGTCTTTCAGTCCTAGAGCTTCCACATGTGAGTTCAGGAGCTATGTCTTTCTCGTCACTTGCTGTTGGGACTGTCCACACAGAGCCCGGTGAAATTGGAGCAATGGTCTGTGCTCCACAGCAATGGGAATGCAGAAATATGCATCCTTCAGATATGTGGATACTACCAGTGTATGTTCACTGCTTGCATCAGATCTGGAATGTAGATCTGGAACTTTTAAATCTCTCAGATCTAAAATGGTGCATATTCCAcctcttattttttaatcagaaaatatCTCAAAATAGCTGGTCAGCCTTTCTGGTCCCTCTACAATTTAtatggcctgttttttttttttttttcctcctagtAGTGACTGCATTTCCTCAGTTAGTACAGCCAGCTGGTTTTGAGTCTATGGAATGGACCCCTGTGTTTGGCAGTGTCCAACAGTGAAACTCTAAGTAAAACCCTGCACACAGTGAAGCGACGATGGGATCCCCTGGCAGTTTTGGTAAATCGTGCTTTAGAGGCTTGAACATGCCCTGTCCTGCCCTGTCCTGGTCCAAAGCtgcttttgtgtatgtgtagtgttattttatttttttttgtagttgagACCTCCTATAGGCTGCATGTGAGGTCCCGGTCATGTAGCAACGTTATTACCTATTAGTACTTGTTAAGGAAATGAGCAAGTGGAAAACTAGTTCTGAAGGAAACAGTCCTGGTGGTCTGGAACAAAAGTGAATACAACTACATCTGCACTGTTTTTGCTTTCTAGAAACCttccattaaatgtttatattgataTTTGTTATTATCTCTGTTGAACAATATAGCAAACAAGAGAATGCACTACATTAtaatttacatgattcatttgttcCTGGTTTAATTCTGTATTAGCTTTAACATAAATTCAGACAAATAACATGATTGCATTTATAAAAATCTCTAAGTCTATACAATTTTACTGTGTATTTCCTTTTTGCACTTATATACTGTGATCTGACCTTAATAAAGTGGAAGtaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12686 lncRNA upstream 2400 19608645 ~ 19611270 (+) False LOC113533903
TU12680 lncRNA upstream 29491 19583977 ~ 19584179 (+) True G10678
TU12679 lncRNA upstream 32004 19580268 ~ 19581666 (+) True G10677
TU12678 lncRNA upstream 34020 19578972 ~ 19579650 (+) True G10676
TU12675 lncRNA upstream 37765 19575515 ~ 19575905 (+) True G10673
TU12672 lncRNA downstream 2054 19623097 ~ 19625024 (+) True G10671
TU12776 lncRNA downstream 73244 19694287 ~ 19734805 (+) True G10748
XR_003404305.2 lncRNA downstream 107595 19728638 ~ 19733702 (+) False LOC113542441
XR_003404303.2 lncRNA downstream 109547 19730590 ~ 19733702 (+) False LOC113542441
TU12789 lncRNA downstream 121083 19742126 ~ 19742495 (+) True G10760
XM_026926354.2 mRNA upstream 2239 19602498 ~ 19611431 (+) False LOC113533903
XM_034305077.1 mRNA upstream 2239 19602903 ~ 19611431 (+) False LOC113533903
XM_026926356.2 mRNA upstream 2239 19605621 ~ 19611431 (+) True LOC113533903
XM_026926838.2 mRNA upstream 51455 19557796 ~ 19562215 (+) True LOC113534194
XM_026926841.2 mRNA upstream 71308 19536539 ~ 19542362 (+) False ndrg1b
XM_026939955.2 mRNA downstream 184476 19805519 ~ 19814849 (+) True si:dkey-239n17.4
XM_026940300.2 mRNA downstream 195377 19816420 ~ 19827597 (+) True syt11b
XM_026940233.2 mRNA downstream 245495 19866538 ~ 19887317 (+) True dcst1
XM_026939662.2 mRNA downstream 267069 19888112 ~ 19914579 (+) True adam15
XM_026939663.2 mRNA downstream 267071 19888114 ~ 19914579 (+) False adam15
XR_003403485.1 other upstream 1443165 18170367 ~ 18170505 (+) True LOC113534245
XR_004579062.1 other upstream 2061161 17494849 ~ 17552509 (+) False plppr5b
TU10566 other upstream 2968590 16626203 ~ 16645080 (+) False tlcd4a
trnaq-cug other downstream 47889 19668932 ~ 19669003 (+) True trnaq-cug
TU12774 other downstream 106801 19727844 ~ 19733401 (+) True LOC113542441
TU12775 other downstream 109108 19730151 ~ 19733401 (+) False LOC113542441
TU13438 other downstream 927530 20548573 ~ 20551038 (+) True G11317
TU13525 other downstream 1053177 20674220 ~ 20676773 (+) True G11401

Expression Profile