RNA id: XM_026939662.2


Basic Information

Item Value
RNA id XM_026939662.2
length 4254
RNA type mRNA
GC content 0.50
exon number 25
gene id adam15
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19888112 ~ 19914579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGAGCACTACAGCGACCTTGTAAACATTTAGTTGAGCCAGAGCTGCAGAGCTACACGGTCGCACCACGGCGAGACGCTGAGATGCACCAGGCTGACAAGGACAGAGGCACTTGCTTTCTCTCAGTGTTGGAACTGACAGCAGCGGAGACATTTTGAATCGGAGATGACGCCTGCGTGTGAAGGCGCGAGCGCGGGGCCGATCTACACTGTTCACTCTGGACTGGAGGCTCAGCAGGTGAAAGGTGTACACATTTAGTAAATAACTTCCCCCCACCCCGCCTGCCTTTATTTCCGGATAGTGTGTCCCCTCAAGACGTAGCAGACACTCCGACACCTGGATGTAGTCGTTGTGGAAACACACATCTGGCAGCTTTTCACTCCTTTCTTGTACACCGAATGGAAACATAGACAATGAGCCACGGTTTTCTGCTTGTGTTTCGGAGCCTTGTCACTGTGCTGCTTTTTCAGGGCACCCCTGTTATAACATTTAGGGGTACACTCACACAAAGTGACCACAGCAGAGTGAGTGTACAGCATAAGAAGGCGTGGACTTCAGCTTTACCTGAGGAAGTCTTCAGCACTGACACAaggacagagacacacagccaAGATGATGTGCTGACGAGCACACCAGCAATAACTCATTCTGTTCACTCAGTGACAGGTCGTAGCAGAGGAGTTAAGCCATTGGGGAAGACGAGACCTTTTGTCATTGTGGATGGACACAGGAGGAGCCTGAGTAACGTTTTACAGAATGGTCACCCAGACAGACTGCTGTGTGGGCTGCAAGTGGGAGACAGCCTCCTTCTGCTGGACCTGGAAAAGAACCAAGAGCTATTGCCTAAGCCGCCTAATATCTTCTACTACCTGCCAAATGGAACAGGGGTGTCCATGAAGGAGAGCCAGGTGGCTCAGTGTTACTATCATGGCTCTGTGAGAGGGTTCCCTCAGTCCCGCGTGGCCATCAGCACCTGTGCTGGGTTACGGGGAGTGATTGTAATCAATGCAAGTTTGAGCTTTGAACTGCAGCCAGACGAATGCGATGAAGACGTAAGGAGAAGTGGTAGTtcagaagaagagaaggaatTGCACACGCTCTACCCAACCCACCAGCTGAGCTCTGAATCTGGGGGATGTGGTGTTTCTCACACCTTTATACCACCTATTCAGATTATTCCACAAATACACAGgACTAAAAGAGATATTCTTTTAGAGACCAAATACATTGAGCTGGTGTTGGTGGTTGATCACAAGGAGTACTTAAATTATCAGAAGAACAAGAAGACTATTATTTATCGCATGCTGGATGTGGCCAACCAGGTAGACTGGTTCTATCGGCCGCTGAATGTGCGAGTGGCCCTAGTGGGGCTGGAGATCTGGAGTGATCAAGATAAAATCCTGATAGATAAGAGCCCCAGTGACACACTCAGCCGCTTTTTGGAATGGAGGAACAGAGAGCTGCTGCCACGACTACGCCATGACAATGCACAGCTAGTCATgggtGAATCGTTTGATGGCACAACAGTGGGCATGGCCTCTCAGTCTTCCATGTGCACCAAGGACAGATCTGGAGGAGTTAGTGTGGATCATCTGGTAAGTGTGCTGGGAGTTGCATCCACAGTGGCGCATGAGCTCGGCCATAACCTGGGCATGAACCATGACACAGCTGACCGCCACTGTCAGTGCCAGAATGAACCACGGCTTGGGGGTTGCATCATGGAGCCGTCCACAGGATTCATGCCAGGTCAGCTGTTTAGCAGCTGCAGTGAGAAAGATCTCTCTCTGAGCCTGATGCATGGTGGAGGCATGTGCCTTTTTAACGTGCCACAGCCAGAAAAGATGCTGGGAGGGCCACGCTGTGGCAACCTGTACGTGGAGAAGGGAGAGGAGTGTGATTGTGGCCTACTTGATgAATGCATTGATCCATGTTGTAATGCCAGCACCTGTAAGCTAATTCCAGGTGCCCAGTGTTCCTCCGATGGCATTTGCTGTGAGAACTGCAAACTGCGTGTTGCTGGATCATTGTGTCGAGAGCCTCTGGGAGAATGTGATCTACCAGAGTACTGCACTGGTGCATCCCCACACTGCCCTCCCAATGTGTTTCTCCAGAACGGTGAGACGTGTCAGGATGGCACGTCCTACTGCTACAGCGGAGTGTGTACCACTATGGATGAGCAGTGTCATATGCTATGGGGAGCCAACTCCACCCGTGCTCCTCCAGCCTGCTTCTCCTTCGTTAACAAACAGGGCAACATGTTCGGCAACTGTGGCCAGATGCCCAATGGCACCTATATACCCTGCTCAAATGATGATGTGCAGTGTGGGAGAATCCAGTGTCAGGGTGGCAGTGATCGCCCACTGATAGACTCAAATGCAAAGATTCTGACAACCAAGGTGAAACTGAACCACAGTGAAGGAGGAGCATATTTCACCTGTCGAGGAGCATATTTCCACCTGGGTGATGATGTCTCTGACCCAGCCATGGTAGCTCAGGGAACTGCATGTGCTCCTGGCAAGgtgtgtttAGACCAGCGCTGTCAGGAAGTGTCAATCCTTGGTGTTGAGGAGTGTCGTGGGAAGTGCAATGGCCATGGGGTGTGTAACAGCAATAAGAATTGTCACTGTGATGTGGGCTGGGCTCCACCAGACTGTAAATACTCAGGAACAGGGGGCAGTGTGGACAGCGGCCCTGCACATCAGCCCAGAGATTCCAATCCCATTCGTGTGGCTCTGCTAGTGATCTTTTTGTTTGTGCTGCCGGTGATACTACTGCTCCTGGCACTCTGCTTTCCTCGCTGCCGCCGAAGGTTCTTATGTTTCAACAACACACCCTTCAGCAAGGCCAGACAGTCCAGCCgCACCCCTGCCACTGAGCGAGTGAACACACATAATAGAGAGCAGATCTTGCCGCTGAGGTACCAGTGGACCCCGCAGAATGACATCCCACTCACACGAGCCATTAGTAAGGCTCAGACCAGGCCTGCTCCTCCTACTAAACCTCTTCCACCCGATCCTGTCTCTAAACAGCCTGTCCAGTCGGCAGGGCAACGGCCTGCCCCTCCCAACAAGCCCCTCCCTCCTGACCCCGCCCCCTCAGAGAGCAAGACGCAGCGAAAGTTGAAGGTGACACGACCCGCTGCACCAAGCAAGCCTCTCCCCCCCGACCCTGTCCTGTCTGACAGACAGAGCCAGAAGCAGATTCCCCCAAGACCTCCAGTTCCTAGAAAGCCTTTGCCCGCAGACCCCTCTGGTTACCCTGCTCCTCTGCCACTGCTGCCCCTCTCTGAGCCATCAGGACACCAcacagctgctgctgcttctgccaGCTTCAGcccttctgctgctgctgttcctgcAAGACGTCCCTTGGCACCCCCCATTAGGGCAGCACACCAGCCCAGGAAGTTCCACACACCTCCCCAAGTGTAAGCAGTGGGTGCTGCTTTGCAGGTTCTGTGTGCTGTGGCCCGGTGATGTGCCGAGGATTGACACACTTCTATTTGCACTGAACATGAGAGACTCGGCACAGCTGAACCAGTGCCACGCACCTGAACAAATTTATCTAAATGGAGTCAGCAAGTTCATTTTAACACATGGACAAACACAGAATGATTATCCAGTGAATGCATTGATAATGATGAAATGCTCAGACACTTTAGAAGTTGACTGATCAAGTCCTCTTTCATCTGCTAAACAGaattctgtatttctgtgtgcCATCACCGGCTACATTACTGATGAGTGTCTGTAAGTTGAACATAGGTTAAGAGCCAGTGTTCTACAGTTAAAGGGCTAGAAATCTACCCTGAACTCCCAGCCAGTAACTaagaattttgttttttgatttgGCAGTAGCTATGCACTACTGATTCAGAAATGATCCGAAAGGTTTGTTGTTACTGTCTTGAAGCACCATGATGACCTTGAGCAAGTTACTTAATATGTGTTTGTCCTAGGAAATTATGATTCtgttaattttgtaatttttatgcAAGAGATGTAAAGAGGATTGAACTGATTCTACTGTGGAGCCCAGGCTGTTCTATGTGGCACTTATCTCAGTGTATAAATCTCACATGTCTATCACTCATGAGATGATGATCATTAATTGtcaaaggaggaaaaaaattagaTGCTGCCGGTCTGGACTCTTTGccttttgtaaataataaaagtgtgagggggatattattgtttattttgcaaaatacagtatttttatgCAATAAACCTGgaagctgtttttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12864 lncRNA upstream 17662 19870246 ~ 19870450 (+) True G10828
TU12842 lncRNA upstream 58615 19829292 ~ 19829497 (+) True G10809
TU12792 lncRNA upstream 142183 19745661 ~ 19745929 (+) True G10763
TU12789 lncRNA upstream 145617 19742126 ~ 19742495 (+) True G10760
XR_003404305.2 lncRNA upstream 154410 19728638 ~ 19733702 (+) False LOC113542441
TU12940 lncRNA downstream 30396 19944975 ~ 19946311 (+) False LOC113542572
TU12949 lncRNA downstream 32526 19947105 ~ 19947437 (+) True G10904
TU13008 lncRNA downstream 113543 20028122 ~ 20072852 (+) False G10957
TU13007 lncRNA downstream 156600 20071179 ~ 20072852 (+) True G10957
XR_004578224.1 lncRNA downstream 300212 20214791 ~ 20217076 (+) True LOC117597377
XM_026940233.2 mRNA upstream 795 19866538 ~ 19887317 (+) True dcst1
XM_026940300.2 mRNA upstream 60515 19816420 ~ 19827597 (+) True syt11b
XM_026939955.2 mRNA upstream 73263 19805519 ~ 19814849 (+) True si:dkey-239n17.4
XM_034307218.1 mRNA upstream 267069 19613670 ~ 19621043 (+) False tmem79b
XM_026939563.2 mRNA downstream 2366 19916945 ~ 19923840 (+) True si:dkey-7j14.6
XM_026940042.2 mRNA downstream 9470 19924049 ~ 19930624 (+) True si:dkey-7j14.5
XM_026940041.2 mRNA downstream 9844 19924423 ~ 19930624 (+) False si:dkey-7j14.5
XM_026940043.2 mRNA downstream 9847 19924426 ~ 19930624 (+) False si:dkey-7j14.5
XM_026939979.2 mRNA downstream 18201 19932780 ~ 19938245 (+) True nudt17
TU12774 other upstream 154711 19727844 ~ 19733401 (+) True LOC113542441
TU12775 other upstream 154711 19730151 ~ 19733401 (+) False LOC113542441
trnaq-cug other upstream 219109 19668932 ~ 19669003 (+) True trnaq-cug
XR_003403485.1 other upstream 1717607 18170367 ~ 18170505 (+) True LOC113534245
XR_004579062.1 other upstream 2335603 17494849 ~ 17552509 (+) False plppr5b
TU13438 other downstream 633994 20548573 ~ 20551038 (+) True G11317
TU13525 other downstream 759641 20674220 ~ 20676773 (+) True G11401
XR_003404321.2 other downstream 1461608 21376187 ~ 21432781 (+) False nbeal2
XR_004578200.1 other downstream 2027613 21942192 ~ 21945409 (+) False LOC117597357
TU14535 other downstream 2382550 22297129 ~ 22304154 (+) False dbpb

Expression Profile