RNA id: XM_026939979.2


Basic Information

Item Value
RNA id XM_026939979.2
length 2367
RNA type mRNA
GC content 0.42
exon number 8
gene id nudt17
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19932780 ~ 19938245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaatcgGCAGCCATTTTGGGGGAGAGTCTAGTAGTTACCGCGATACCGGATTCATGCATAGTtgtgtatttgttgttattgttgtttgaGGGCTATGTCAGGTCTGTTATTGTAGTGGTAACCCTTCTTCACGAGTTATTATAACTTAATGTTATAAATGCTGTTTAATTTTATCGATATTAATGGAGAAAGTACGACGAATTTTGGTGCATTTATCCAAAGAAAGCGCAGCTCCACACTGTGCCCAGTTTGTTCAGAGCATTACTGGACACTTTACTGGACATCATGACGACCAGACAACTGTGAATTGTTCCCTGGAGAACAACCGATTTATTTTGTGTGAGGGAAGTCATGAGAGAGGCGTGCCTCTTAAGAGGGCGCCGTTCTGCCCAATCAAATTGCTCTCTCCCTCAGAGGCGGCGTCACTTCCTGCAAACACTCTCCGCAGAGGGGTGGATGTGGGCGTGGCCATACTgctccagtcagccaatcagaggctGTTGCTGACCAGGCGAGCTCATGCCCTGAGGATTTTTCCCAATGTGTGGGTCCCACCTGGTGGCCATGTGGAACTGGATGAAAAGCTGTTGGATGCAGGCCTGCGGGAGctgagggaggaaactggaCTTAAACTGGACCCTGAGGACATCTCCTCCTCTCAGCTGCTGGGCCTCTGGGAGTCTGTATACCCACCCATGCTGTCCCGAGGACTGCCCCAGAGACATCACATTGTCACCTACATGCTGCTTTGCAGTAACCGTACACACCTGCAGCTACAGTCCTGTATGAGACCAGAGCCTGCTGAGGTGAGTGCGTGTGCGTGGGTTGATGCAGGACTGGTCAAGGCTATCGTATCggctgtggatggagaggaaaAGTCTTTTCATATACCTGCTGATCTTCCTCAATCCGTCAGTGTTACTGAGGTGTCTCCTGAGGGTGAGCTGCGTGAGTCCACGCTGCCCGTGTCAGTGTTCTGTAACCGGGCTCCGGCTGAGGGCGAGGATGTGGAGCGGGTCAGCACCGGAACCAAGTACGCCTTAGAGCTCTGGCTGAGTACCCTGGCAGCTAGCTGCGAGAAGGGCTAACTGCAGCAGACGCTTTCTCACTCTCAGGCCTGATCTGTGGAACCCAAATAAGCACCTGACATTTACCTTCATAATGCACTGAGGTTGTTTTCTTTAAGTGCCATCAAAAACATGATGCTAGGATCTTACTTCTGTTAAGCATCTCTGCTCTTTtcctaaacattttaattaatctaATTAAACATGAAATGTTTGCCAGCCACAAGGGGGCAGTAAAGACTCTTGTTACCTCTGAAACAAATGACATACAGTTGCTTGAATTGTGAAGTTTTTACTCAGATAAACACTTAGCCCACTAATCAAGTAGTGTAGTTCATTTAAtctattgatttattaatttttattatgttcAAATAGTAGTGATTTGtctttctatattttattcagTACATATTACAAAACTCATCTTAAACTCATTGTACAGCACTATGAACCTTGCATAACATGTGGATACAGCAGGATTAAAACATAGAGCGTGTCTCACAATGAGTGTTACAAAGGCCATGCTGACTGGTCGTCTCATTAGGTGTGGTCTTGTTTGTTCTAAAACAATAACAGTGGCACAGCCATTGTGACTTGTCCTGGGCTTATAAGGACCATGAGCACTTTTATAAACTATGATGCAGGTTAATTGATTCACagttggcattttttttttttggacagtgaaaCTTTAATAGCTGCTAAAACAATCATTGGCAGATTCATTATAGTCAATTGTATGCAAAGCATTTATAAGAAACTAAAAGTTTTAACAGAATAGCCTCAGAAAAAAGACTCTATACATAAGCACATCATGAACTTTTATGACAatgcattatgttttatttagtgattttttttctaacactTCAGTTTGAATTGAAGACAGACAGTAACAGCAGATAACATGTGCCTGTGTACATTTTACTGGCTTTAAATTCCATTTCtctataaaatacacaaaaactggttcttctttggatagttaaatCCTAATTCTAATTGGAACCTTCATTAATAGCGAGACATTCAGTTGtaattcaaaaaatattttggccaCAAGTGCCTGAAAATTCCACCCTATTCCACTGTGGGTGCAACCAGTGAGTAATGCCTAAAaggatttttaattatttcagtatCATGTCATAGAAATGTGTTCAATCACCTTGTTACCTTATCACCTTGAATGTTTATCGGTTTCAGCCCCGCCTGGCCTGGATTTGTCTGGGTGTAACAGGATGTAAGCAGAAATATGGAATACGtcacaaaataaattttgaCTATACAAAACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12864 lncRNA upstream 62330 19870246 ~ 19870450 (+) True G10828
TU12842 lncRNA upstream 103283 19829292 ~ 19829497 (+) True G10809
TU12792 lncRNA upstream 186851 19745661 ~ 19745929 (+) True G10763
TU12789 lncRNA upstream 190285 19742126 ~ 19742495 (+) True G10760
XR_003404303.2 lncRNA upstream 199078 19730590 ~ 19733702 (+) False LOC113542441
TU12940 lncRNA downstream 6730 19944975 ~ 19946311 (+) False LOC113542572
TU12949 lncRNA downstream 8860 19947105 ~ 19947437 (+) True G10904
TU13008 lncRNA downstream 89877 20028122 ~ 20072852 (+) False G10957
TU13007 lncRNA downstream 132934 20071179 ~ 20072852 (+) True G10957
XR_004578224.1 lncRNA downstream 276546 20214791 ~ 20217076 (+) True LOC117597377
XM_026940042.2 mRNA upstream 2156 19924049 ~ 19930624 (+) True si:dkey-7j14.5
XM_026940041.2 mRNA upstream 2156 19924423 ~ 19930624 (+) False si:dkey-7j14.5
XM_026940043.2 mRNA upstream 2156 19924426 ~ 19930624 (+) False si:dkey-7j14.5
XM_026939563.2 mRNA upstream 8940 19916945 ~ 19923840 (+) True si:dkey-7j14.6
XM_026939662.2 mRNA upstream 18201 19888112 ~ 19914579 (+) True adam15
XM_034305905.1 mRNA downstream 4326 19942571 ~ 19946885 (+) True LOC113542572
XM_026939590.2 mRNA downstream 11413 19949658 ~ 19963557 (+) True mtx1a
XM_026940157.2 mRNA downstream 31676 19969921 ~ 19988126 (+) True thbs3a
XM_026940302.2 mRNA downstream 54842 19993087 ~ 19998202 (+) True hjv
XM_026940303.2 mRNA downstream 64953 20003198 ~ 20006824 (+) True txnipb
TU12774 other upstream 199379 19727844 ~ 19733401 (+) True LOC113542441
TU12775 other upstream 199379 19730151 ~ 19733401 (+) False LOC113542441
trnaq-cug other upstream 263777 19668932 ~ 19669003 (+) True trnaq-cug
XR_003403485.1 other upstream 1762275 18170367 ~ 18170505 (+) True LOC113534245
XR_004579062.1 other upstream 2380271 17494849 ~ 17552509 (+) False plppr5b
TU13438 other downstream 610328 20548573 ~ 20551038 (+) True G11317
TU13525 other downstream 735975 20674220 ~ 20676773 (+) True G11401
XR_003404321.2 other downstream 1437942 21376187 ~ 21432781 (+) False nbeal2
XR_004578200.1 other downstream 2003947 21942192 ~ 21945409 (+) False LOC117597357
TU14535 other downstream 2358884 22297129 ~ 22304154 (+) False dbpb

Expression Profile