RNA id: TCONS_00003014


Basic Information

Item Value
RNA id TCONS_00003014
length 1920
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_000034
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1617203 ~ 1619314 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgctgaagctgttccagagcaatacatacAAAATGACctctaggtgtcactgtagagacggGTTTAGAAACattgacacatttgcttcgactgtttcagtgtttcacaaagcctcgctttgcccaccactaactAGACAAGGGAACGTTAAGAAATATAACAgcaaaacaagactcagcaatgtgtgtgtgaatgtgaggtgtTTTCACAGTTGTGGAAATCAGTTCATCATGAGCTTCATGCTGTGTGTGAGCAATCAGAgagaatcaggaactggtgtgtgtgtgtgtgtgaggtgcatgatagtACATGTAGGCCAGTTCAGAGATTTgaagttctccagtgatctgctcAGGCTAGCTCGCTGATGGTTGTGACACATATCAAGACCTCATTATTCACACAGCCATTGTTCATGATCTAAATaggaaaattaaaaagcaaaaagacTTAATGATGAAATCTGATTAGTTTAATTAAAATCACTTCATCAGAGCATTAATGCAAAGGTTACACAGTTGCATAAACAGCATGCTTTATCAAATTCTGtgcaaagattttaaaaaatcaaacagAAATGAAACAGTTTTGTCCAAATAGTGGAAATATAAACAATTACCTGGACACAGAATTAGGTTAAAAATCCATCAATTCATGAAAATGATATAAAAGAAGAGATTCATTATGCAAAATTgctaaataaatgtgacttttttgtgtatatatatgtataaaatgcaaATAGAAAAGCTTTGTGTAAATATACTGGCCCGACCAGAAGAATCAGAagtaaaaatatgcaaaaatagaGATCTGCGGCTTAAAGGTGATTGTGAGTGTTTGGTCACGGCTCTGATGAATGTTACGAGTGTGTGTTATCTAGTGTCACTAATGAATGCAGATGATAAGCATATGCCGCTGTTAAGAGGACTAATATTACTggctgaatataataataattttcctgGTCCTGCCATTGATTCAAGGTAAACAGATGCTGATCTAACAATTCAGGATCAGTACACTGTATTACTGCAGCTCCACCagtgagtgcacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacaggcacacacacacgcacacacacatgcacacacatgcacgcacacacacacaaacacacatttaagcACAAAACCACACatacttaacacacacacacacaaacgtttacacacaaatcacacacacacaaagaacacACACTTCACACTTacatacacaccacacacacgcacgcatgcatgcacgcacacacacacacacacacacacacaacatgcataacacacatttacacacacacacacacacacacacaacatgcataacacatttacacacgaaaccacacacaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcatgcTTAAACACACATTGACACATTAAaccatgcacacacaaacacactcacacactctcatacacaaacacaccacacatacacacatttactacacacatttatacacacaaacagtatacatacgtacATATACATACAAGCACCCCCcctcccacacaaacacacacacacacaaacacacacacacacacacacacgcgcacacagaTCCAGACTGTGATCTAGCAGCAGTTGTTTGTCTGGATATCGTGAACTATTTGATCTTCTTGGCGACGTCCAGGTAAGCGAACTGGATCTCTCGGTCAGCAGGGCAGGTGTTGATGAACTCCTCTCTCTGATAGGCTTTATTCAGATATCTCCAAATCCCGCTCATCTCTGCAGGAATCTCCAGGCCTCGGTACTTCCTAGCCACGAT

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0045055 regulated exocytosis biological_process
GO:0099634 postsynaptic specialization membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0098839 postsynaptic density membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002807 lncRNA upstream 38952 1571847 ~ 1578251 (+) False XLOC_000032
TCONS_00002806 lncRNA upstream 40813 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00003011 lncRNA upstream 256372 1358897 ~ 1360831 (+) True XLOC_000031
TCONS_00003010 lncRNA upstream 256752 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00003009 lncRNA upstream 274966 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00000064 lncRNA downstream 70733 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00000065 lncRNA downstream 85816 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000071 lncRNA downstream 111078 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000073 lncRNA downstream 171458 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000077 lncRNA downstream 279595 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000062 mRNA upstream 2703 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000059 mRNA upstream 646252 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 1008956 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 1009148 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 1013806 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000063 mRNA downstream 70461 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 92826 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 170043 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 185980 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000075 mRNA downstream 218850 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000061 other upstream 41640 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000060 other upstream 398398 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000053 other upstream 1040682 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 1070986 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 1101881 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000067 other downstream 92839 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 98383 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 99297 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other downstream 99893 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000094 other downstream 571386 2190700 ~ 2214397 (+) False XLOC_000046

Expression Profile

//