RNA id: XM_034308432.1


Basic Information

Item Value
RNA id XM_034308432.1
length 3006
RNA type mRNA
GC content 0.43
exon number 2
gene id b3galt2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24117818 ~ 24138641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGCATTCACAGCAGACTGGAGCAGCAGACCCCCtcccacacacatgcatgcgGGTGCATTTTACCATCACACAGAGGTAACAGAGGAATGgaagacagagaagagtcttgccCTCTTTTCACCACTTTTGTGTATAATGTTTCTCCATGGGAGGCCTCAGGCAAGGCACAGAGTGTGTCCTTTGTTGCTATTTACCTGGCTTTTAGTGTGATGATCTAGCTACCGCCTTCCTCACAAGCCTCAGCTGGACTCACCTCCAATCCTTTGCAGAAAGCGCAAGCACTGGTATGAGGAAGCAAATTTCTACTGAAGTATGATGAAGCtttgctgttattgaaaagaaGAGAGCAGTGAGGAGCAGTGTGTCCCAGAAATGCTCATCAGCAACATGTCATCCTTTCTCTAGCTCTGCCTGGGGTCCAAACATACCCAACTGCCAACTTTCTACCATCAGATAACCCTCAGGCTTCTCATAACACGTGTTTGACCTCACTAAATTGCACCACCACACTTTTACCAAGCAGCACATATCCGTAACATGCAGTGGCGACGGCGACACTGCTGTCCAATCAAGATGACATGGAATATCAAGAGGTCACTCTTCCGTATGCACATGATGGGTCTGCTTTTGCTGGCCTTACTTTTCACCATCTTTCTCAACTGCAAAGACTGGCTACCCAGTCAATCAGGACTACGAGAAAACACTGTGGCCTACACAATGCATGACTTGCACCCAGTAAAGGAACAAGCTGAGGGCAACCAAAGCTCACTGCAAAGCCTCTGGAGGGAGTCACTTTTTGTTCCTTCTAAGCCGCCTATGAACTTCAGTTCTCACCAATCAGAGGTTGCAGTCCAAAGCATCTCAGGAATGGAAGCATCCCTCAGCACTAACAAAACAAATGGCAATACCTTGCACAGAGAAATGGGTGTGGGAGAGCAGCTGGCACCAAATCCATACAGGTATTTGCTGAATGAGCCCTACAAATGTCAAGACAGCAGCCCCTTTCTCATTCTGCTCATTGCAGTAGAGCCAGGACATGTGGAGGCCAGGAATGCCATCAGGCAAACATGGGGAAACGAGAGCATGTTCATGGATGTGGGCTTTGTGCGTCTCTTTCTCATGGGCATGAAAAGCAGTCCTGATGGCCACCCTCAGAGCACCATTGTGGAAGAAAGCTTCCAGCACCATGATATCATACAGCAGGACTTCACGGACACTTACTACAATCTTACCATCAAGACGCTGATGGGCATGAACTGGGTTGCCGAGTATTGTCCTCATACCAGGTATGTCATGAAGACTGATAGCGACATGTTTGTCAATACAGAGTATTTAATCCAAAAGCTGCTGAAGCCAGAGTTACCGCCTCAGCACAACTATTTTACCGGCTACCTAATGCGAGGATATGCACCAAATCGCAACAAAGACAGCAAGTGGTACATGCCTCCAGAGCTCTATTCCAGTGAGAGGTACCCCATCTTTTGTTCTGGCACAGGCTATGTGTTCTCTGGAGACATGGCAGGCAAGATCTACCAGGCATCATTAAGTATACGTCGTCTGCATCTTGAGGACGTATATGTTGGGATCTGCTTAGCAAAGCTGCGTATTGATCCTGTGCCACCGCCAAATGAGTTTCTCTTCAACCACTGGAGAGTATCCTACTCAAGCTGCAAATACAGTCACCTTATCACTTCCCACCAGTTTCAGCCGAGTGAACTCATCAAGTACTGGAACCACTTGCAGAGCAACAAGCACAATGCTTGCATCAACATGGCAAAGGAGAAGAGCAGCAAAATGCATCACAGGAAGTTGGAATGGGAAAGGCTTCGGTGATGACTACAAGCATGATTCAGTgcaacaatatattttaaagcatgTGTGAAATCAATCAGTACACTAATATAGGAAAGAGCACAGTTTCTGTCATTATGTAAAGtcaattaaaactatttttaaaatttgatagATGTTATGTATTGTAAATCTGTTTAGCTATTTTTAAAAGGGATGTGAGGTAAATGTTATGTGCAATATATTGCATGCACAAAAAGTATCATAGGTGAGATCACCTTTTTCAGGTGCCAAGAAAAATTACAATGCAACAATTTATCTCCAAGCTTTACTAATATTTATTGGTAgatatggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacactcaccagccTGCCACAGGAACAGTTGCCTGCTCATTCaggcaattattcaatcagacAATCCTACAATTATTTggtcacattttcccccattctgatgtttgatgtgaacaataactgaagctctcgACCGGTACCGCATGATTTTATacgttgtgctgctgccacatgattgggtGACTGGATGATTGagtgaatgtgcaggtgtacaggtgctccaaaatagagacaaagagacaaagatTGTAGTTTTTAAGAGCTTTGCATATGTTTACCCTTCCTGGGGactaaagaaaattatttattaaatgttttcctTCTCAGTGGTCTCCGTGATGGGTTTGTTATGGTTGTTGAAGCAATAATAAATGCCTTATGTAAAGTGatctacataaattaaaattcCAAGGGGTACTTTAATGCTACACCTGTAagtatttatatacagtgtatatatacgATATATATATCGTGAGCCGGGATGCCAGACAATGCAGgcaatcttagggtcttaggcaagtgCAGGTTTTCTAAGGTAGTTATTCATTTGGATAACATTTTAGAGATGTGTGAATTAGCAAAGGCAATGTAGTAATGCCGTCATGTTCTGCCCACGTCCCAGTGCAGCATGGGGCTGTAGCAGGTGGTCGCTGACCTTAGTCAAGTGCTTGGTGAAGTGCTGCTCTGAAAGCAGAGTGGGCTTTATACAGTGGatgtaaaaagtctacacacccctgttaaaatatcaagtttttgtgatggaaaaaattaaaccaagataaatcatgtca

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221202 lncRNA upstream 289916 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 316856 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 325691 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 403447 23712033 ~ 23714371 (+) True G186814
TU221099 lncRNA upstream 441250 23671984 ~ 23676568 (+) False G186798
TU221284 lncRNA downstream 14474 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 17139 24155780 ~ 24162236 (+) True G186951
TU221282 lncRNA downstream 17961 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA downstream 18481 24157122 ~ 24203702 (+) False G186949
TU221319 lncRNA downstream 22627 24161268 ~ 24186454 (+) True G186976
XM_026917310.2 mRNA upstream 114026 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA upstream 114026 23978873 ~ 24003792 (+) False aspm
XM_034308759.1 mRNA upstream 191674 23835703 ~ 23926144 (+) True dennd1b
XM_034308530.1 mRNA upstream 650617 23413029 ~ 23467201 (+) False LOC113526144
XM_026947256.2 mRNA downstream 69235 24207876 ~ 24210763 (+) False glrx2
XM_026947260.2 mRNA downstream 69247 24207888 ~ 24210763 (+) False glrx2
XM_026947255.2 mRNA downstream 69317 24207958 ~ 24210763 (+) False glrx2
XM_026947254.2 mRNA downstream 69330 24207971 ~ 24210763 (+) False glrx2
XM_026947259.2 mRNA downstream 69517 24208158 ~ 24210763 (+) False glrx2
trnaq-uug_6 other upstream 170755 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 178930 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 179438 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_4 other upstream 180730 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-uug_3 other upstream 183112 23934635 ~ 23934706 (+) True trnaq-uug_3
TU221326 other downstream 69252 24207893 ~ 24210725 (+) True glrx2
TU221328 other downstream 69252 24207893 ~ 24210725 (+) False glrx2
trnar-acg_9 other downstream 1367782 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 1393104 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 2047221 26185862 ~ 26212109 (+) False polr2l

Expression Profile