RNA id: TU26749


Basic Information

Item Value
RNA id TU26749
length 541
lncRNA type sense_over
GC content 0.44
exon number 4
gene id LOC113546630
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6205284 ~ 6208666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAACCGGTCATCCGTCACTTCCCGTGATGCTTTGCGGGCAGTTTGGCCCTTGCGAGGTTCCGTAGTACTTCAACGCGTTGGCTTCGATTGCGGACGTTTTCTGTGAAGGTCGTGCATCGAAAGATCTTTCAGCATGTCTCTGCCAAAGCCTCAGATGAGAGGTCTCCTCGCAAAGCGGTTGAGGTTCCATCTGCCCCTCGCTTTTGCCCTGGCTCTGTCCGCAGCAGCTACATTCAAGttcacAGTAACAGAACCCCGGAAAAAGGCTTATGCTGACTTTTACAAGCAGTATGATGCCATGAAGGAGTTTAACAGTATGAAGGAGGCTGGGGTTTTTGAGAGTGCGAGGCCTTCTGGTGAATAAATTGATGTGGTTCTGTCTCTGCATTTTTATTCTGTGCTGCACCTTCACTACtggatgttaaatatataataaacatacaaataaatcatTGTCAATTCCTGTACAAGTGCAGTAATTTCTTGAGCCATtgagaaataaaatgtcttttgactCTGTTTCTTTAATGTACTTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26760 lncRNA downstream 56117 6148946 ~ 6149167 (-) True G22470
TU26653 lncRNA downstream 161532 6043116 ~ 6043752 (-) True G22367
TU26629 lncRNA downstream 215089 5989970 ~ 5990195 (-) True G22345
TU26607 lncRNA downstream 240101 5956639 ~ 5965183 (-) True blcap
TU26768 lncRNA upstream 21106 6229760 ~ 6229969 (-) True G22478
TU26833 lncRNA upstream 74461 6283115 ~ 6283948 (-) True G22539
TU26832 lncRNA upstream 89468 6298122 ~ 6301047 (-) True G22538
TU26972 lncRNA upstream 413281 6621935 ~ 6622442 (-) True G22650
TU27022 lncRNA upstream 466826 6675480 ~ 6675687 (-) True G22695
XM_026921377.2 mRNA downstream 10096 6181028 ~ 6195188 (-) True tomm34
XM_026921368.2 mRNA downstream 10102 6181028 ~ 6195182 (-) False tomm34
XM_034312125.1 mRNA downstream 44610 6151401 ~ 6160674 (-) True LOC117599288
XM_026927486.2 mRNA downstream 86716 6055822 ~ 6118568 (-) True rims4
XM_034300540.1 mRNA downstream 128407 6074035 ~ 6076877 (-) True LOC117596222
XM_026915885.2 mRNA upstream 96518 6305172 ~ 6313411 (-) True eif6
XM_026935885.2 mRNA upstream 115460 6324114 ~ 6362835 (-) True mmp24
XM_026926155.2 mRNA upstream 191762 6400416 ~ 6413610 (-) True fam83c
XM_026923858.2 mRNA upstream 225265 6433919 ~ 6462290 (-) True LOC113532448
XM_034311409.1 mRNA upstream 294867 6503521 ~ 6516423 (-) True gdf5
XR_004577391.1 other downstream 128407 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 669224 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 669277 5534124 ~ 5536007 (-) False romo1
XR_003403146.2 other downstream 1004072 5111462 ~ 5201212 (-) True LOC113530384
TU26888 other upstream 270748 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2053965 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2272397 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2272397 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 2272397 8481051 ~ 8484114 (-) False tcta

Expression Profile