RNA id: TU369043


Basic Information

Item Value
RNA id TU369043
length 1100
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G311599
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20967715 ~ 20968865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATATATTCAACGTTTCCTTCCCCTTTTCACCGCGTAACATGTAAACAGCTAGCATAAACAACAGCTTACAATGGTATAGAAATAGAAAACCCTGCAGCCTTCTCTTCGCTTTCCAGTTCTCTAGAGTGGATAATGCAAATGTAAAAGAaattcaaagaaaaataaaaagtacatattTACAGTGAGTAATAATACACAATGGTGATTAATCATATTGCATAGTCTCAAAGGTGGGCATTTTCCTGtaaataaaaagtctacacgagtcaaatgaataataataataataataataataataataataataatccTAGAGACAATCACAACTTCATCGATACGTCCATTACAATAAGTCAAGGGCAATTCAGAGTAAAATAGTTATAGTTGATGGAAAGTTCCACTGAAACCTAATTCTTTATTAGAAAAAGGTGTTCTACATGATGGAAATGGCCTTCTTTAGGTATAACTCTCTTAACATCATTTATGCTTAAGATTCTTGGTATTATAAAGCAAGATatgctggggaaaaaacatataatatgTCCATAAAAGTCCCAACTTTTGTGTATGCAACAACCAAGTACTAAAATCAGACTGTCTTCATTGTGATTCAATTTTGCATTGAAATTTTTGGGAATTATTATAATATCCGGtatatgaggggaaaaaaaaacaacacagttcACAAAAGAGGGTTACCGGAAAAATACTGCAGGCGATCTCGGCTTAATTTCTTCTCTTTCATTCGTCGGTTTTGGAACCAGATTTTCACCTGTCGGTCGGTGAGGTTCAGCATGCGCGAGAGCTGCAGCCGCTTCTCTttgttgatgtaaacattaaagaAGAACTCGCGTTCGAGCTCCCGGATCTGAAACTTGGTGTAGGGGCATCGCTTCTTCCGCGTCCGAGTGGCACCTTAAAATTTAAGATagaagaaatatattttaaaaaataatatttttaaatggaaaaaaacccaaataaataacagaaaacgGCCTAGGTCAAAGGTCAGTAAGAAATAAACCACATTGTGCTATAGGCTGTGTATTTCCCACCCTGTTAATCACCACGAGCAAGAACAGTAACATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369035 lncRNA upstream 16177 20948321 ~ 20951538 (+) True G311591
TU368903 lncRNA upstream 24086 20932678 ~ 20943629 (+) True G311483
TU368908 lncRNA upstream 29834 20903312 ~ 20937881 (+) True G311488
TU368906 lncRNA upstream 82874 20882446 ~ 20884841 (+) True G311486
TU368910 lncRNA upstream 114200 20807858 ~ 20853515 (+) False znf740a
XR_003403815.2 lncRNA downstream 37485 21006350 ~ 21012460 (+) False LOC113538073
XR_003403816.2 lncRNA downstream 40903 21009768 ~ 21012460 (+) True LOC113538073
TU369109 lncRNA downstream 181933 21150798 ~ 21155101 (+) True G311649
TU369113 lncRNA downstream 190592 21159457 ~ 21164926 (+) True G311652
TU369115 lncRNA downstream 190592 21159457 ~ 21159955 (+) False G311652
XM_026932826.2 mRNA upstream 66304 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA upstream 66304 20899115 ~ 20901411 (+) False smug1
XM_034314334.1 mRNA upstream 89308 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314163.1 mRNA upstream 106988 20831856 ~ 20860727 (+) False znf740a
XM_034314335.1 mRNA downstream 64258 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 144569 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 144569 21113434 ~ 21135134 (+) False LOC113537842
XM_034314489.1 mRNA downstream 168944 21137809 ~ 21149284 (+) True faim2b
XM_034314304.1 mRNA downstream 242387 21211252 ~ 21371670 (+) True lrp1aa
XR_004580241.1 other upstream 85350 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1183802 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1183802 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1450556 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1879909 19087025 ~ 19087806 (+) True G310681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_01139343_01141069.mRNA True 1567 mRNA 0.43 2 CI01000057 1139039 ~ 1141438 (+)
eurasian perch (Perca fluviatilis) TU68930 False 1741 lncRNA 0.41 4 NC_053116.1 20882974 ~ 20952782 (-)