RNA id: XM_026923970.2


Basic Information

Item Value
RNA id XM_026923970.2
length 8674
RNA type mRNA
GC content 0.57
exon number 60
gene id ubr5
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4932155 ~ 4977527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggggaaaaaataacGAAGCAGCTCGAGTCGGTAGAGTTAAGATGGCGGCATGTGGATTGTTGTAGGAGCTTGTTGGATGTTTCGGCTCTGGATTTTTGTTACGTTTGAAGacaatttgtaatgaaataacGCAACCAGACTCAGCAAAGTGATAAAAGACCCACTTAGAGAGATAATTTCCCATATTTTGGGTTATTTCGGATTTAAATCATGACCTCTATCCACTTCGTTGTGCACCCGTTACCCGGGACTGAGGACCAGCTCAATGACAGACTTCGTGAAGTGTCCGAAAAACTCAACAAATACAACTGTAACAGTCATCCACAGCTTAACTTGCTGGAGCAGGCCCCACTTAAGCAGTGTGTAGTTGGACCAAACCACGCTGGCTTCCTGCTTGAGGATGGACGGATCGGCAGGATAAGCTTCGCCGTGCAGCCAGATCGACTGGAGCTGGGCAAGCCAGACGGAAACGATGGTTCAAAGTTGAGCAGTGGCTCAGGGACAGGAAGGACCTCCAGGCCAGGTAGGACTAGTGATCCGCCCTGGTTCCTGTCTGGTTCTGACACTTTGGGCCGACTGGCAGGCAACACCCTTGGGAGCCGCTGGAGTTCAGGAGTCGGCGGAGGAGGTGGAGGCAGCGGGGGCAGTGGCGGCGGAGGGACAGGAGGAGGCGGGGGCAGCGGTGGTGGAGGCGGAGGGGCTAGTGGAGGGGGAGGAGCATCTTCTGGTCGCTCAAGTGCTGCAGCACGTGATTCGCGAAGACAGACACGCGTGATCCGcacaggcagagacagagggTCGGGTCTGCTGGGGAGCCAGCCGCAACCTATCATACCAGCATCCGTCATTCCTGAGGAGCTCATctctcagGCCCAGGTGGTGCTGCAAGGCAAATCTAGAAGCGTCATCATCCGCGAGCTGCAGCGCACCAACCTGGATGTAAACCTGGCCGTGAACAACCTGCTGAGCCGAGATGACGAGGACGGGGATGACGGCGATGACACAGCCAGCGAGTCCTACCTACCTGGAGAAGACCTGATGTCGCTACTGGACGCTGACATCCACTCAGCACACCCCAGCGTCATCATCGACGCCGACGCCATGTTCTCAGAGGACATCAGCTACTTCGGCTACCCGTCCTTCCGGCGCTCGTCGTTGTCACGCCTCGGCTCTTCACGAGTTCTCCTTCTTCCCTTAGAGCGTGACTCGGAGCTGCTGCGCGAGCGCGAGTCCGTGCTGAGGCTCCGCGAGAGGCGGTGGCTGGACGGAGCGTCCTTCGACGCAGAGCGTGGCTCCACCAGCCGGGACGGAGAACCAAGCCTGGACAAGAAGAGCGTCCCTCTGCAGAGCCCTGTCTCTCTGGGAGAGGAGCTGCAGTGGTGGCCTGATAAGGATGGTGTGAGGTTTGTAAGCATCGGGGCGATGTTCTCCGAGCTCGTGGCTGTCAGCTCCAAAGGCGAGCTTTACCAGTGGAAATGGAACGAACCAGAACCTTACAGAAACTCACAAAATCCTTCCATCCATCACCCTCGGGTGTCCTTCCTCGGCCTGACCAACGAGAAGATCACACTCTTGTCTGCTAACAGTATTCGGGCCACGGTGGCTACTGAGTCCAACAAggtggcaACGTGGGTGGATGACACTCTGAGTTCAGTAGCGTGTAAGCTGGAACACGGGGCTCAGACGTTCCCGGAGCTGCAGGGTGAACGCATTGTATCCCTGCACTGCTGCTCTCTGTACACCTGCGCTCAGCTCGAGACCAGCCTCTACTGGTGGGGTGTCGTGCCTTTCAGTCAACGCAAAAAGATGCTTGAGAAGGCCAGGGCTAAGAACAAAAAGCCCAAATCCAGCGCTGGAATCGCCTCCATTCCCAACATTACAGTGGGCACTCAGGTGTGTTTGAGGAACAATCCCCTGTATCATGCAGGCGCCGTGGCCTTCTCGGTGAACGCCGGCGTCCCCAAGGTAGGCGTCCTTCTCGAGTCCGTTTGGAACATGAATGACAGCTGCCGCTTCCAGCTACGCTCTCCTGAAAGCCTGAAGAGCATGGAGAAGAGCGCCAAAGCCCAGGAGACCAAGGCGGAGATCAAACCCGAAATGGTCAAAACGGAGATGGGTCCTCCTCCGTCTCCGGCCTCCACATGCAGTGATACCTCCTCCATCGCCAGCAGTGCCTCTCTGCCTTATAAGCGGAGACGCTCCACACCGGCGCctaaagaggaggagaaggtcAACGAAGAGCAGTGGCCTCTGCGCGAGGTCGTGTTCGTGGAGGATGTTAAAAATGTCCCAGTCGGGAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGGACGTCGAGCAGCGTGAGCAGCCAGAGTGCAGCTCCCACTGACTCTGACCCGTCCTCTCTCCTGCAGGACTGCAGGCTGCTCCGAATCGATGAGCTACAGGTTGTTAAAACTGGTGGAACTCCTAAAGTTCCAGACTGTTTTCAGCGCACACCTAAAAAACTTTGTATTCCAGAAAAGGCTGAAATTTTAGCTGTGAATGTTGACTCCAAagGAGTCCATGCTGTTCTCAAAACAGGAAGTTGGGTTCGGTACTGTAtctttgacttggccactgGCAAAGCCGAGCAAGAGAATCATTTCCCTACGAGTAACCTGGCCTTTCTGGGCCAGAGCGAGCGTAATGTGGCCATCTTCACTGCTGGCCAGGAGAGCCCCATCATCCTGCGGGATGGCAACGGCACCATTTACCCAATGGCCAAAGACTGCATGGGTGGCATCCGAGACCCTGATTGGCTGGATCTGCCGCCTATCGCTAGTTTGGGAATCGGAGTTCACTCACTTGCCAACCTGCCCAACAACTCCACAATCAAAAAGAAAGCTGCAGTCATTATTATGGCAGTAGAGaagcAGACGTTGATGCAGCATGTGTTGCGCTGTGATTATGAAGCGTGTCGACAGTACCTGGTGGGTTTAGAGCAGGCCGTGCTCCTGGAACAGAACCCCCACGCTCTTGGCGCTCTGCTCGGCCATCGATGTGACGGAAACAGGAACCTTCTGCACgcctgtgtctctgtctgcttCCCCGTCAGCAACAAGGAGACCAAGGAGGAGGAAGAAGCCGAACGCTCAGAAAGAAACACATTCGCTGAGAGGCTGTCTGCAGTTGAAGCCATCGCTAATGCCATTTCAGTGGTGTCCAGCAATAGCTCGGGAAACAGGACCGGATCGTCCAGCAGTCGCGGtctaCGCCTACGAGAGATGATGAGGCGCTCACTCCGAGCCGCCTCAATGGGCCGCCACGAGTCAGGCCCCTCCTCCAGTGACCACCAGGACCCTGTGTCACCACCCATTGCCCCGCCTAGCTGGGTGCCAGACCCCCCACCCATGGATCCTGATGGTGACATTGATTTCATCTTGGCCCCTGCAGTTGGCTCGCTCACTACGGCGTCCTCCGGCCCCAGTCAAGGTCCGAGTACATCCACCATTCCAGGCCCGTCATCTGAAGCATCCGTGGTGGAGAACAAAGACCGCAAGGCCAATGCTCACCTGATCCTCAAGCTGATGTGTGACAGCGTTGTCCTGAGACCTCATCTACGGGAATTGCTCTCTGCAAAGGACGCACGAGGCATGACTCCGTTTATGCTCGCCGTCAGCGGGAGGGCATACCCAGCAGCCATCACTGTCCTGGAGGCAGCCCAAAAAATAGCTAAGGGAGAGTCCAGTATCGGGGACAAGGACGACGTGAACTCTGTGTTTATGGAAATGATCTGTCCTGCGGGGACAAACCCGGATGACTCACCGCTCTACGTGCTCTGCTGTAACGACACCTGCAGCTTCACCTGGACAGGAGCCGAGCACATCAACCAGgacatcTTTGAGTGCAGGACATGTGGTTTGCTGGAGTCTCTGTGTTGCTGCACCGAGTGTGCCAGGGTTTGCCACAAAGGCCACGACTGCAAgttaAAGAGAACGTCTCCCACTGCGTACTGTGACTGCTGGGAGAAGTGCAAGTGCAAAACCCTGATCGCCGGGCAGAAAGCGGCACGTCTGGACCTGCTCTATAGGCTGCTGACCACCACCAACCTAGTGACGAGTCCCAACAGCAGGGGAGAGCACATCTTGCTGTTCCTGGTGCAGACAGTTGCACGGCAGAGTGTGGAGCACTGTCAGTACCGGCCACCCCGTATCAGAGAGGACAGGAACCGCAAAGCTGTTAATGCAGAAGACTCAGACATGCCAGATCATGACCTAGAGCCTCCACGCTTTGCCCAGCTGGCTCTGGAGCGTGTGCTGCAGGACTGGAACGCTCTTAAGTGCATGATTATGTTTGGCTCACAGGAGAACAAGGATCCgCTGAGTGCGAGCAGCCGGATTGCTCATCTCTTGCCGGAGGAGCAGATGTACCTGAACCAGCAGAGTGGTACAATCAGGCTGGACTGCTTCACTCACTGCCTCATTGTCAAGTGTGCTCCAGACCTCACTTTTATCGACACACTGCTGGGCACACTGGTGAAGGAACTGCAGAACAAATACACCCCAGGTCGCAGAGAGGAGGCCATCTGCGTCACACGTCGCTTCCTGCGCTCTGTCGCCAGGGTGTTTGTCATCCTTAGCGTAGAGATGGCTTCGTCCAAGAAGAAGAATAACTGTCCCCAGCCCATAGGGAAGTGCAGGCGTGTGTTCCAGGCACTGCTGCCTTACGCTGTTGAGGAGTTGTGTAATGTAGCTGAGTCTCTGATTGTGCCTGTGCGCATGGGCATCGCCAGGCCGACGGCACCGTTTACGCTGGCCAGCACCAGCATCGATGCCGTGCAGGGCAGCGAGGAGCTTTTCTCTGTGGAGCCACTGCCCCCACGACCCTCACCTGATCAGTCCAACAATTCCAGCCAATCAGCCTCCTCTTACATCATCAGGAACCCTCAGCCACGGCgcagcagccaatcacagaccGCACGTGGACGAGACGAGGAGCAGGACGACATTGTGTCTGCTGATGTCGAGGAGgtggaggtggtggagggggtCGCTGGAGAGGAAGATCACCACGACGACCAGGAGGAGCAGGGGGAGGAGCCTGCAGAAGCTGAGGGACAGCACGATGAACACGATGAGGATGGAAGTGACATGGAGCTTGATCTGTTAGCAGCCGCCGAGACAGAGAGTGACAGTGAAAGTAACCATAGCAACCAGGACAACGCAAGTGGGCGCCGCAGTGTCGTCACGGCAGCGACGGCGGGTTCTGAAGCAGGTGCCAGCAGCGTGCCTGCCTTCTTCTCCGAGGATGACTCCCAGTCGAACGACTCGAGTGACTccgacagcagcagcagtcagAGTGATGATGCCGATCAGGAGACATACCTGCTGGATGAACCGCTGGAGAGGACCACAGGCTCTGCCCATGCCAACAGTGCCGCTCAGGCCCCACGCTCCATGCAGTGGGCAGTGCGCACCACTCCCAGCCAGCGCACGGCCGGGGGCGCCCCAACTAGCTCCTCCACTCCCGCAGCGAGCTCTGCAGGCCTCATCTACATCGACCCATCTAACCTGCGCCGCAGCAGCGCCATCAGCACcagtgcagcagcagcagccgcGGCCCTGGAGGCCAGCAACTCTAGCAGCTACCTGACATCCGCCAGCAGCCTGGCAAGAGCCTACAGCATCGTCATCCGCCAGATTTCTGACCTCATGAGCCTCATCCCCAAGTACAACCACCTGGTGTACTCGCAGTACCCCGCTGCTGTGAAACTCACCTATCAGGATGCAGTTAACCTACAGAACTATGTGGAGGAGAAGCTGGTCCCAACATGGAACTGGATGGTGTCTATCATGGACTCGACGGAGGCTCAGTTGCGCTACGGCTCGGCCCTGTCCTCCGCGGGAGACCCTGGGCACCCGAGCCACCCGCTGCATGCCTCGCAGCACTCCGGCCGCAGGGAGCGCATGACTGCACGTGAGGAGGCCAGCCTGCGAACACTGGAGGGACGCAGGCGTGCCGCTACTTTGTTGACTGCTCGTCAGGGCATGATGTCAGCGCGCGGAGATTTCCTGAACTATGCGCTGTCCCTGATGCGCTCCCATAATGACGAGCACTCTGACGTGCTGCCTGTGCTGGACGTGTGCTCACTGAAACACGTGGCCTACGTTTTCCAGGCCCTCATTTACTGGATAAAAGCCATGAACCTACAGACCACGCTGGACACCTCACAGATGGACAGGAAGAGGAATCGTGACCCGTTGGAACTTGCATTGGACAATGAGGACTCGGAGCATGAGAATGATGAGGACACCAATCAGAGCTCCACCCTTCAGGATAAGGAGGAAGAGCCTGTTCCTGCAGAAACGGGTCAGCATCACCCATTCTTCCGTCGCTCCGACTCCATGACCTTCCTCGGCTGCATTCCGCCGAATCCCTTTGAAGTCCCCGTGGCCGAGGCCATCCCTCTGGCTGACCAGCCTCACCTGCTGCAGCCGAATGCTAGGAAGGAGGACCTGTTCGGGCGGCCGAGTCAAGGCCTCTACTCGTCCTCCTACATGGCAAGCAAAGGTCTCTCAGAGCTCACTGTGGACATGAACTGCttacagATTCTGCCCACAAAGATGTCTTATTCAGCCAATATGAAAAACGTTATGAGCATGGAATCTCGGCAGAGGGGTGGAGAAGAGCAGCAGACGACGGCACAGGACATAGACGTCTCTAAGCCTGGCCCGTCCCCCCACGACCTTGCTGCCCAGTTAAAGAGCAGCCTCCTCGCAGAGATTGGCCTGACGGAGAGTGAAGGCCCACCCCTTCCCACTTTCATTCCTCACTGCAGCTTCATGGGCATGGTGATCTCTCACGACATGCTGCTGGGACGATGGCGTCTCCTTGAGCTCTTCGGCCGTGTCTTTATGGAGGATGTAGGGGCTGAACCTGGATCTATCCTGACTGAGCTGGGTGGTTTTGAGGTGAAGGAGTCAAAGTTTCGGCGGGAGATGGAGAAGCTACGGAACCTGCAGTCTCGTGATCTGGCCTTGGAGGTGGACCGTGACCGCGACCAGCTCATTCAGCAGACCATGCGTCAGCTCAACACACACTTTGGCCGCCGCTGCACTAGCACGCCCATGGCTGTGCACCGCGTCAAGGTCACGTTCAAGGACGAGCCTGGCGAGGGCAGCGGCGTGGCACGCAGCTTCTACACGGCCATCGCGCAGGCCTTTCTGTCCAACGACAAACTGCCCAACCTGGACTGTGTACAGAGTGTCAGCAAGGGCATGCAGGCCAGCAATTTGATGCAGCGCTTGAGAAACCGAGATCGGGAAAGGGAGAGGAGGAGTGGTGGCCTGAGGGCAGGATCCCGAAGAGACCGCGACAGGGACTCTCGGAGGCAGCTGTCCATTGACACCAGGCCGTTCCGTCCTGCATCAGAGGGGAACCCCAGTGACGAGCCAGACCCGCTGCCTGCTCACAGACAGGCTTTAGGGGAGCGTCTGTACCCCCGTGTCCATGCCATGCAACCGGCGTTTGCCAGTAAAATCACAGGCATGTTGCTGGAGCTCTCACCTGCTCAGCTGCTTCTCCTGTTGGCCAGTGAGGATTCTCTGCGAGCCCGTGTAGAGGAGGCCATGGAGCTCCTCATCACACATGGAAGGGAAAACGGTGCTGACAGCATACTGGATCTTGGTCTCCTCGACACTCCAGAGAAAGCACAGCAGGAGAATAGGAAGAGACATGCCTCCACCCGCAGCGTGGTGGACATGGAGCTGGACGATACGGATGACGGCGATGATAACGCTCCTCTGTTTTACCAGCCTGGAAAGAGGGGCTTTTACTCCCCCCGGCCTGGGAAAAACTCCGAGGCTAGGCTCAACTGCTTCCGCAACATTGGCAGAATACTTGGCCTGTGTCTCTTGCAGAATGAACTGTGCCCCATCACCCTGAATAGGCACGTCATCAAAGTGCTGCTGGGTAGAAAGgtgAACTGGCACGACTTTGCATTCTTCGACCCGGTAATGTACGAGAGTTTGCGGCAGCTGATTCGCCACTCACAGGCAAGCGAGGCAGAGGCTGTTTTCGCCGCCATGGACCTCGCCTTCGCCATCGACCTCTGCAAGGAGGAAGGATCCGGACAGGTGGAGCTGCTGGCGGGCGGCAGCAGCATGCCTGTAACCCCTCAGAACGTGTACGAGTATGTGAGGAAATATGCTGAACACAGGATGCTGGTGGTAGCGGAGCAGCCTCTGCATGCCATGAGGAAGGGCCTCCTGGACGTGCTCCCTAAGAACGCTCTGGAGGATCTCACAGCCGAAGACTTCAGGCTGCTCGTCAACGGCTGCGGCGAGGTCAACGTGCAGATGCTCATCAGCTTCACGTCCTTCAACGATGAATCCGGTGAGAACGCAGAGAAGCTGTTGCAGTTTAAACGCTGGTTTTGGTCCATCGTGGAGAAAATGAGCATGACGGAGAGGCAGGATCTGGTGTATTTCTGGACGTCCAGCCCGTCCCTGCCTGCCAGTGAGGAAGGTTTTCAGCCGATGCCGTCCATCACCATCAGGCCTCCGGACGACCAACACCTACCCACGGCCAACACGTGCATCTCACGCCTCTACGTGCCGCTTTACTCCTCCAAACAGATCCTCAAGCAGAAGCTCCTCCTCGCCATCAAGACCAAGAACTTCGGCTTTGTGTAG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K10593 EDD1, UBR5; E3 ubiquitin-protein ligase EDD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387029 lncRNA downstream 429554 4501589 ~ 4502601 (-) True G326630
XR_003403377.2 lncRNA downstream 520754 4408491 ~ 4411401 (-) True LOC113532978
TU386991 lncRNA downstream 537381 4385075 ~ 4394774 (-) True G326597
TU386989 lncRNA downstream 537381 4391550 ~ 4394774 (-) False G326597
TU386990 lncRNA downstream 537381 4391550 ~ 4394774 (-) False G326597
TU387308 lncRNA upstream 127343 5104832 ~ 5105966 (-) True G326875
TU387406 lncRNA upstream 203327 5180816 ~ 5181017 (-) True G326940
TU387411 lncRNA upstream 220734 5198223 ~ 5199406 (-) True G326945
TU387426 lncRNA upstream 278306 5255795 ~ 5256011 (-) True G326958
TU387428 lncRNA upstream 279562 5257051 ~ 5257276 (-) True G326960
XM_026924013.2 mRNA downstream 465709 4450350 ~ 4466446 (-) True si:ch211-107n13.1
XM_034297818.1 mRNA downstream 476548 4450350 ~ 4455607 (-) False si:ch211-107n13.1
XM_026924675.2 mRNA downstream 557261 4350718 ~ 4374894 (-) True ago1
XM_034297939.1 mRNA downstream 584902 4308606 ~ 4347253 (-) False LOC113532858
XM_034297938.1 mRNA downstream 584902 4308606 ~ 4347253 (-) True LOC113532858
XM_026924262.2 mRNA upstream 10184 4987673 ~ 5001824 (-) False azin1a
XM_026924261.2 mRNA upstream 10184 4987673 ~ 5000553 (-) True azin1a
XM_026924625.2 mRNA upstream 42284 5019773 ~ 5045469 (-) False spire1b
XM_026924624.2 mRNA upstream 42284 5019773 ~ 5045469 (-) True spire1b
XM_026924422.2 mRNA upstream 80364 5057853 ~ 5070186 (-) False LOC113532791
TU386070 other downstream 1693008 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 2834720 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 3481439 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 3561126 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 3830038 1047583 ~ 1102117 (-) True nek11
XR_003403372.2 other upstream 851985 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 898607 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 1452371 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 2079305 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 2401291 7378780 ~ 7386306 (-) False sec61b

Expression Profile