Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403377.2 |
| length | 312 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 3 |
| gene id | LOC113532978 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 4408491 ~ 4411401 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU386991 | lncRNA | downstream | 13717 | 4385075 ~ 4394774 (-) | True | G326597 |
| TU386989 | lncRNA | downstream | 13717 | 4391550 ~ 4394774 (-) | False | G326597 |
| TU386990 | lncRNA | downstream | 13717 | 4391550 ~ 4394774 (-) | False | G326597 |
| TU386960 | lncRNA | downstream | 93735 | 4308637 ~ 4314756 (-) | False | LOC113532858 |
| TU386940 | lncRNA | downstream | 214244 | 4192950 ~ 4194247 (-) | True | G326557 |
| TU387029 | lncRNA | upstream | 90188 | 4501589 ~ 4502601 (-) | True | G326630 |
| TU387253 | lncRNA | upstream | 555897 | 4967298 ~ 4968547 (-) | True | G326830 |
| TU387308 | lncRNA | upstream | 693431 | 5104832 ~ 5105966 (-) | True | G326875 |
| TU387406 | lncRNA | upstream | 769415 | 5180816 ~ 5181017 (-) | True | G326940 |
| TU387411 | lncRNA | upstream | 786822 | 5198223 ~ 5199406 (-) | True | G326945 |
| XM_026924675.2 | mRNA | downstream | 33597 | 4350718 ~ 4374894 (-) | True | ago1 |
| XM_034297939.1 | mRNA | downstream | 61238 | 4308606 ~ 4347253 (-) | False | LOC113532858 |
| XM_034297938.1 | mRNA | downstream | 61238 | 4308606 ~ 4347253 (-) | True | LOC113532858 |
| XM_026923879.2 | mRNA | downstream | 134678 | 4261821 ~ 4273813 (-) | False | si:dkeyp-97a10.3 |
| XM_026924013.2 | mRNA | upstream | 38949 | 4450350 ~ 4466446 (-) | True | si:ch211-107n13.1 |
| XM_034297818.1 | mRNA | upstream | 38949 | 4450350 ~ 4455607 (-) | False | si:ch211-107n13.1 |
| XM_026923970.2 | mRNA | upstream | 520754 | 4932155 ~ 4977489 (-) | True | ubr5 |
| XM_026924262.2 | mRNA | upstream | 576272 | 4987673 ~ 5001824 (-) | False | azin1a |
| XM_026924261.2 | mRNA | upstream | 576272 | 4987673 ~ 5000553 (-) | True | azin1a |
| TU386070 | other | downstream | 1169344 | 3237701 ~ 3239147 (-) | False | LOC113532533 |
| TU385328 | other | downstream | 2311056 | 2088259 ~ 2097435 (-) | True | G325145 |
| TU384835 | other | downstream | 2957775 | 1429932 ~ 1450716 (-) | False | kif13a |
| TU384829 | other | downstream | 3037462 | 1370476 ~ 1371029 (-) | True | G324748 |
| XR_004576952.1 | other | downstream | 3306374 | 1047583 ~ 1102117 (-) | True | nek11 |
| TU387191 | other | upstream | 552216 | 4963617 ~ 4977453 (-) | False | ubr5 |
| TU387192 | other | upstream | 552216 | 4963617 ~ 4977527 (-) | False | ubr5 |
| XR_003403372.2 | other | upstream | 1418073 | 5829474 ~ 5978379 (-) | False | zfpm2a |
| TU388042 | other | upstream | 1464695 | 5876096 ~ 5978268 (-) | False | zfpm2a |
| trnam-cau_47 | other | upstream | 2018459 | 6429860 ~ 6429932 (-) | True | trnam-cau_47 |
