RNA id: TU386960


Basic Information

Item Value
RNA id TU386960
length 6078
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC113532858
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4308606 ~ 4347253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtatttattttcctgttttagatgattttagattttttttttcccagcattcTCTTTTctcccttctttttttctttctcttgttttaAAAACCAAGTAGAGGCCATGTTATAGGACAGATTGTGATATTCCGGTTTTAGTGCAATAATGGATCAGCGCCTATGTAGAGTACAGCTTTCTGGATCATGTGAGAATGGAACAGGGATAAGGATGTGAGGATAATGATAGCAACCCAGCGCTCTGTATGTGAATAGGAGTTGGAGGGTTGTAGAATATAAGGTGGAAACGTGTATGTTTGGCGCTTTTACAGTTGCATGCGcatattcaaaaaaatatatataataggTAATAAATTAGTAGATCTCTTTGATGAGGGTTCAAAATCAAGTGCCTGGTTTTAGAAAAGGAATATTTTctagaaggtttttttttgttaatgaaagATTTTAAGAAAATGGTTAATGCAGTGCATTAAGATGCCCAAGAGTGCAGTTTTGCTGGagttgtgatAAGCCATGATCTGTTCTTAACTTCTGTTTTGCGATGGAATGACGTTAAGAATTTCTTTCACTGATCAGTATTGTGTGGCCTTTAGGTCATCTTTGGATTCAGTACGAGTCCTTCATAGCCGTGTAACTCTCCCAGCTTTTTATCCTACACAGCAGAAACTTATCCCATCGTCTGCCACTTCTGATCAGGATCTAGCTGCTATTATACAGGTTCCTTTGACGAGACTGACGGTGTGCTTCAGGTTCATTCAAGGACGAAAGAGAGTGAGGTGATGCAGCagcacatggtgtgtgtgtgcacgcttgtTCACCAGAGGGCCAGTAGAGGGCAGTGTGGAGTTTTACTTGCAGGCTCTCTTGCTCCTTCTGAAGCACGTCCCGTTTTGTAAGCGAGGGGACAGTAACCTGCACtaattaaagctgaataaaGCTTGGTGCTATACTGTGCGTCGTTTATGGCGCACACTACAGAGATTTTGATGTGAGGGTGGGAACATGGAGTGTGCAAATGGTGCTGGCTACATATCTCTTTTTGTTGGAACAGACATTTGGGTTGTGTTTGATTAGGTGTGCTGAAGAGGACAGCTGTGGTACCTATGACGCCTAAACCTCAAACCAGTTCATGTCATGCTAAATGGTCCCTGATGGCATCTATCACTTTAATAACTTACTGGAAAAATCCGACTTCCTTTCCAATCCAGAGTTGACgtatttataactttttttgtttttaaattatttcatagACAAAAATGTAGTTTTACTGACTTTATGTTACTAAATACTATAGACAGCGGTAATGGTGCAAGATTATGTTATGTAGAGACTGTGCTTTAAGGCTGTACTTTGTGTCTGAAGCATCTTCTGAGCAGAGATATTAGTGCATGTGCTAAAGTTGAACATCACAGTGAGCTTGAATGCATCACCATCTAATCAGGTgatacagtgtagtgtataaaGTTTGTACCaatcctgtttctcatttttaaaacaatacgAATATTCTAGTACTAGTAGTACCAATACCAAGGAACAAAGCCTGCTCATTGCAAGCTTCTGTCACCAGTTTATATAAATCATCACAAGCATGTTGGTGTGCTTTAGGACAGTTTATGTCCTATGGTAATGTGCAAGATCTGTGTTGTATATTTTAACACCACATGTTCACAACATAAAAGACATCACTGAATCGGATAATCTGTAAGTTAAAACCTGATCCAGTGCTGATATCGATACTGTGATGAGTATGTCTTTAAATAATGGAACCACTATCGGAGTTAGTATGGTTGATCATCAGTTTTGACCCACCATGACAGTGTAGAGTATTTATAAATTCTTGTTTAAGGAAGGTTCTGGTAGCAGATGTTGTGAATAAAGCTGTGTAGCATGTTGGACCGGATGGTGCTTAGTGTGTAGCAGTTGTATTTTGCCTCATGAGTATTCTCAGCTTCACATAATTTTTGTTCAGCACAGTGGCTGACGTTTTGCTATCCTTTCATGAGGACTGAAGTCGACTCGAACCGCAATCGAACCGAAACTCCTAGGCCTTCCccttttcagtgttcagtgtaaaACGTGTGGAGCCAAAAGAGGTTAAAGTCCTTAGAAAGTGCCTTTCCTCATGACGGTGCTGAAGAATCCGAATTTAAGTGACAGATCAAACAGTTTTCTTTATCTTACCTTGCACACATGCAGACGCATGCACAAGCTTACATTCAGACATTTTTCATCTAAAGAACGAGGCTTGGTGAAGTCTCTGTGTATATTCAGTTATAACGTTGATAATATATGCCAagtataacaaaaaaatgtatatgattGAGCTCTGGGTTTTGTGTCAGGACCAGCGGGGAAGGTGTTCAGGGGGAATTGGTACACAGCCTGACATGGAGAGAAAAGCCTAGCACTGCACTTTAAAGACTGCCACCCAAACCGGAAGTAAAGACTGATTTTCTTTCTGATTGTttggggtttttgttttttatcttcTAAGCATGTAGGCATGTGCCGGACAAAAGATCAGACTATCCCGGCATCCCATTTAGGAGGATGTTGCCTAGATAGGTGGCTTTTATGGGCAGTGTTTGCACTCTGAAGGTAGTGCAGTCTCACTATTTAATGCCTGaaattagccccgcccccaggtGGAACAAGACTGTTCAGTAGCTCCTTATAAATACTCCTGAAATGTGTGTAGTTTAAGAGAAATTTAAGACATCTCCCAAAGCAGCTCTTAATTACAATTTTATCTGATAAGTCGTGATGAAACATTAGACAGAAATTTAAGAATTTaatatcggcacatgcctaTTCGACAGTCGAGATTTAAGTTTGGCTCCCCGCTGGTTTGAGGTCATTTCAGGTGGCTTTGTCACCACTCGTGCAATGCCCTATAGAGAGTACTTACAAATATCATGAGTCTATTTTATTACCTTCACTTTTGACCTGGAGTATTAGGGTCAAGAATTAGAGACCCCTCAGGCGCTTGTCGGTCACATGGGTGCCCGTCGGTCCAGGAGGAAATACCTCTTACAAGAGATCTCGAAACACTGCACCTCACTGACCTTGGTATGCTGCAAATGTTCAAGTAAACGAGTTAAACTGCAAACATTGCTTTGATTACAGTATCAGTGCTAGATTTAATGCCTGACAACATTTATCCTTAACTATTTGAGTAGATTGTAagaagtgggtttttttttgtgtgtgagtgtctctTTAACacttctttctgtttattgagccaacttttcatttttgtcttatttaatttttttttcttttaatatattcGAAATATATATGCGAAATATTTTATGGTGTATTTATTAAAAGCGTTCTAAAGTGCGGCTGGAGTGTCCGCATAGTAGGCAGCATTACAGAGGGGGGAAGGAGGGGCAGCAAGAGGGCGCCACATCCCAAACAAGCAGTCCTCACTCTTGTGTTAGACGAGAGCCCTTCAGATCCAGTGCTGAAGAGccgatttctttttaaaaccagTCTCCCAGAATCGTCTGGTTTCCCTGATTAGTGCTGGGATGGAATCCTGTGCACAGTTTGACATTTTGGAAAGTTGAAGAATGTTAGTCAGGTTGAATCAGAAgtgtgctgataatcagttgTACAATATATCATGACACTCAGCACTTTAGTGTTATCATCATGGAcagatgaaaaatatcattacccctgtgttatatatgtttgtgCTTCATTCAGAAGGCTTCCTCATTTTGGACAAAAATGACCCGCATGGAGAAGGCAATCCCACAATTCTGTTCACCATgggttttaaaagaaataaacacttttatttacagtaatacagtTTGCAAACCTAAATTCAGCACGTCTAATTATTGAGAGATGTTATCAGGACTGGATCTTCAACAACGCTAAGCAATCTTTAAACACAGTGAGGGTGACTGCGAACATGATGTTGTATTAAGGCACAACATAGTATCTTCAAGAAATTATTCTCCCTTGGCATATTCTTAGGCATGACGtggagcagagttactgttaccacctataacaacacatcctgaattgttttatccctcttataccacagcgaatTGCAAACTATTACAATGTTTCtacattacaatttattaaagagagacatgtcatatttttttaatccatttatagttacacgtAATGTCAAATGTCTGCTtaaatttagttcctgttaccacttgcATTCTAAAACCTAAAAACAGTCGTACTGTCAccaccctttcttttttttctcctataaaattagcaagacaaaaaaatgcagcttgtcatattactgagaaaccaaaaGCACAAACTCATGTATCTCCTTTGTCGGAGAacttgctgactgttacaaaggagctgacactgaagacttcttccataaatgttgaataaacgtctcctaacagaaacTTCTATGATTTTGCTGTAGAAATGAGACCGTTGCTGTAGAAGTGATAACGTTAGAATGGGTGCATtgttataaacctgtgatttgaattgtaGCCAGCgttactgtcaaagctgctgttgtaaaaaaaataaaatttaatcaacactttttgattaatcagatttgagaattaagCAGCGCTGTAGTATAAATAGTATAAATCCAATATTAAAATCTTCTATCACAATAATCACTTAATAAACTTTTATCGTTGTTTACGATgatatttttaatcacattagACTGGAAATCATTTCTCAGTCAGAGCGAATGTTCTGTCTGCCATGTTTTTTAGTGGAGCTCTTATTTGTTGAACAGAATCATGGGATTGCCTTCTTGTTCAAAATAAGGACCTGTCCCCATGCTACCTTCTGAATAAGACAGACCTCTTAGAGAGCCTTATCAGAATAGAGAGTgatgagaatttaaaatgatatgCTTATTGCAGTATATCGTGTAATTGATTATTGGTGCATGCCTGCTAGGTGTTAATGACAAACTTGACACTACGTGTAGAGGAATAGAAGGGGAGCTGCTCCATCCCAAACCCCTCCAAATGCTGCTTATTTTCTGTTTAGGGGACAGAGAACCACACTgacaatacaataaacaaagCTGACGTGTTTCAAATCCAGAGCTGCTAAACTCCAGCCATAGAAGTTCCCCTGCGTTTGGGGTGGGAAGTTGGTAGTCGCGTGCTCAAGTTGAGTCGTCTTTTGTGCCAGAGCCATTTAAGGAGAGAGCAGGAAGTAAAACGAGTCCCATTCCTCTCGGATGACATGAGCCTCAGCCTTAACTGTTGTCGGAGTTTttgatttctgtttattaaatgCCTTAGTTTGTATAGAGAAGTATGCTAACTTGCAGTTGCGTCTTATAAACCACTAACTGTGCAAATCCCCACGTGTGAAAATGTACTACTCGTCCAGCGTACGGCTCCTCCAGTCCAGCACGATTAAGACAGTCACACTCTGACGGCCACAGCTCGTACCACCGTCTCGTCATCAGTCGCAGGTCTCGTCTTCGGCCATTAGTTAATTTAATGAAGGGGGACAGAAACATGCAGCTCCAGTGGAGTTCATGCATGAAGAGTAACGCACATGCACAACTGTTCCTGAACTTGTGGATTGTTTACAAACAGTTGTTTACTGAAAACGTCAAGCTCCAGCATTCCAAATGACGACTGTAGATGCTGTATAGTGTCTCAATTTAgcagatcaaaaaaaaaaaaaaaaaaaagttcctttaAATTTCTCTAAATGCATTATTTAGAGATGATCTTTCTTGTCCATCCACGGCACAGGACGCTGAACTCCACGACATCTTCAAACAGTAAAGTTTATCCCTAGAGGAACCAAAGTATGCACTCTTTCAGCTAAGTGTCCTTCAGGACTGTCCTTCCGCTCGGGGGTCTCAAGGACGTTCTTCATGAATGTTTCATGTCCAGGAGCTCCATgactctgtctccctctctttctctctctgtgtcgcTACACCAAGGGGtcttttattttacctttaaaaGTATTTCTTATGTATGTTTTGTAACTCTTTCTCTGATGGCCTTTTAGTGTTGCTTTGCCTTAGACTGAAGTGTATCTTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386940 lncRNA downstream 114390 4192950 ~ 4194247 (-) True G326557
TU386871 lncRNA downstream 231669 4061916 ~ 4076968 (-) True G326488
TU386581 lncRNA downstream 306812 4001618 ~ 4001825 (-) True G326236
TU386580 lncRNA downstream 307122 3999109 ~ 4001515 (-) True G326235
TU386553 lncRNA downstream 349642 3957503 ~ 3958995 (-) False vsig10l
TU386991 lncRNA upstream 70319 4385075 ~ 4394774 (-) True G326597
TU386989 lncRNA upstream 76794 4391550 ~ 4394774 (-) False G326597
TU386990 lncRNA upstream 76794 4391550 ~ 4394774 (-) False G326597
XR_003403377.2 lncRNA upstream 93735 4408491 ~ 4411401 (-) True LOC113532978
TU387029 lncRNA upstream 186833 4501589 ~ 4502601 (-) True G326630
XM_026923879.2 mRNA downstream 34824 4261821 ~ 4273813 (-) False si:dkeyp-97a10.3
XM_026923878.2 mRNA downstream 34824 4261821 ~ 4273813 (-) True si:dkeyp-97a10.3
XM_026924012.2 mRNA downstream 51665 4250942 ~ 4256972 (-) True LOC113532587
XM_026924694.2 mRNA downstream 63777 4242354 ~ 4244860 (-) True LOC113532948
XM_026924693.2 mRNA downstream 74650 4225960 ~ 4233987 (-) True LOC113532947
XM_026924675.2 mRNA upstream 35962 4350718 ~ 4374894 (-) True ago1
XM_026924013.2 mRNA upstream 135594 4450350 ~ 4466446 (-) True si:ch211-107n13.1
XM_034297818.1 mRNA upstream 135594 4450350 ~ 4455607 (-) False si:ch211-107n13.1
XM_026923970.2 mRNA upstream 617399 4932155 ~ 4977489 (-) True ubr5
XM_026924262.2 mRNA upstream 672917 4987673 ~ 5001824 (-) False azin1a
TU386070 other downstream 1069490 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 2211202 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2857921 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2937608 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 3206520 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 648861 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 648861 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 1514718 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 1561340 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2115104 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU219321 True 445 lncRNA 0.55 2 NC_053127.1 639186 ~ 639726 (+)
tiger barb (Puntius tetrazona) TU219321 False 385 lncRNA 0.69 2 NC_056720.1 2140507 ~ 2142350 (+)
mexican tetra (Astyanax mexicanus) TU219321 False 5048 lncRNA 0.40 2 NC_035914.1 30690047 ~ 30695175 (-)