RNA id: XM_026923878.2


Basic Information

Item Value
RNA id XM_026923878.2
length 4136
RNA type mRNA
GC content 0.46
exon number 9
gene id si:dkeyp-97a10.3
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4261821 ~ 4273813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAACAGATACTCAAACGCACTACTACCCCTATATAAGAGCACTACACAGGGCGTGACAAAATGGCATTccacaccctatgtagtgcactgtaCATGCTATAGGGAGCTAATTGTTATTGAGCCCAGTGTAGACGTTGGCGGTTCTTTAGATAGGTGTAAGCGAAACATGACGGCTAATAAAAGAAAGCAGActaGTCCAGACTGAGATGAATATACTGTTGTGTACATTTGTGGTCATAATTTTGGCAGTGCTTCCTCTGACGTCATGTCAGGACCCAGTGCCCATTCAGTTCCAGAGCTCCCCGGTGCTGGTGGCTACAGGAAACAATGCTGTTTTTACAGTGCAGACCATCTCCAATGTCTTCTCCATTACGTGGCTCGCTCCCGGGGGAGGCACTCTGGGCCAGTGGATCAACAGCCAGGCTGTGCTTAATCCGATTGCCCAGTACCAAGGCAGAGTGAGCATCAGTGCCACCCAGCTCACAATCAGCAACAGCCAACTCAGTGACGCTGGAAGCTACACGGTCACTGTAACACCATCTGGTCCCACTGGACTGGTCACCAACTCACGCTCTGTCACTTTGTCGGTTTTCGTTGCGGTGGGTGCTGTGAGCCTGTTCGTGCCGTCTGTGACTATAGAAGGTGGCAACGCGTCCTTAACCTGCAGCTGGACTTCAGGCACCAACACCAGCGTGACATGGGGTAAAGGTAGCATCAATCTTCCCTCAGACCCTCGCTTCATCATCACCGCTGGGTCTCTGATTATCAGCCCAGTGAACAGGAACGATGCCGGCCAATACAGCTGCACCGTCAGCAACCCCATCAGCAGCCAGACTGCCACGGCAAGCCTCACTGTTTACTATGGTCCGGACACCCCTCAGGTGACGAGGACGTCCTCTGATTGTGTTGGTGGGGGAGACGCCATCATTGGACAGACAGTGCAGCTTACAtgcacatctgtctctctgccccCTGCTCTCTTGTCATGGCAATTCAATGGTCTACCACTGACAACCAGCCAGGCAAACGGCGGCACGctgaatttgcagattttttcCACAAATCAGAGTGGGCAGTACACATGCTCAGCTCGTAACAGCATCACAACACAAATGTCACAGCAGCAGATAAGCCTCAGTGTTGTGGGTACGTGTCTGAGTGTAGGTGCAGTTGCTGGAATTGTCGTCGCCTGCTTTGTAGCTCTCGTGTTAATTATTGTTGCGATTGTACTGATACTACGTCAGCGAAATGTTGATAAGAGACTCAGGACAGTCATTGGACAGCAGAAGGAAAACCTGAACAATAGgccaacaGTTCTTCCAGCTCCACAGAATGGCCATGATAATCCTGGGTTTCTTGGCCAGGCTGACCAACCTGACCCACCGATGTATAACGATAACAGACTCAATCGTTCAAAGAATCAACAAACCAATGGCCaacacagcaacaacaacaacaacgataTACTGACGCGAAACAGAACAGCTAACACCACTGCCATTCAACCCAATGGCCATCTTAATACTGACACGTTCTCAAATAATGCCAACCTCAACTCCAGTGCCCACCTACACGATAGACAGCGGAATAGCAATTCAAATCGACATAACACTGGCTCAATTCAACAAGTGGGTCAACAGAACCCAAATATTCTCATACAGACTGGCCAGGCTGAACCGGGACCTCACACAGTCCTCATAAACCTTAATACACTACCACAGCATCAGAATGCCACCACACAACCTCACACTGTGCAAGTCAGTTTCAGTGCACCTCCACCTTCTTCAGAACAACCCAACCAGAACGCCATGCACTATAATGATCAGCAAACCAATACCATCCAGCAGGAGCTTCTTGATAACACTCGGATGGATAACATACGTAATGCAGCACAGCCTGCCCACAATAGCACCTTAAGAAATGAACAACCGAGGGATCACCGTGTCACCAACCAGACACGGTCTAGGCGGAATACTGACAACACCTATCCTTATTCAGATCTGACTCGTACTCAATTAGGCAGCACACTCTCCATAGCTGTTGATGACTCAGATGCTCAGATGCGTCAGATGCCATGGGACCGTATGCATGGTACACCTGCATATCCGAATCCTCAAGTGGACAGTTATGAATCCCAAAATTCAACACACCAAAATAGTTCATCACATTCAGAGGGTGAGCATTCAGCTCCAGCTCTAAGACCCTGGAGGTCACCTGTGGATGAACCGATGCGGAACATTTCCAGAGCTTCAAGAAGAAACTTTCTGAGACAGCTTGCTCACAATGCTGCCCAGAGACGCTCTCGAGCAGATCAGAATGTGTCAAGACAAGTCACGCAACCTAACACGATTGCTCAGCCACGTGCTGACCATCAAAGTCGGACTGCCCCACAGCACATCACATCCCAGAGAAATGTCATGGACGAGATGGCCATAGCTGTTCCCGTTCCTCGACATCAAACTGTTCAAATGCAGACTGCTCAACCAACACATTTGATTAGTCAGGCTGGTCCAGATCAAAGGCAGACTGGACCTCTCAATGCTGCCACTCCAAACTCCCTCATGTTAACTCACGCTGCTTTGCAGCAGCACACCAGCCAGACTCCCAGCCCCTTTGTTAACCAGATTCAGCAGACCCAAGCTGCATTGCAGCATCCGGGAACTCAGTCAACACCTGCTCAAACTCATCCTACTAGGCAGAGCAACCAGGCTGGTCAAGTTGCTCCAGCTCCCCCTCCAGTTCTGCGCCTAGCAGAGTTTAAAACACTACCAAGAGAGCATATACAGAAACCACATGCTGTAAAGCCGGTTCAGGTGATGAGACGGCCTGTGGTCATGCATCATGGACATAGACCTCACAACATGCCCAGGCATGCAAGAACCATGCATAACAACCTACACAAACACCCAGCGAACCCTAACATACAttggcatggcaacacacaGGGCCACCCAGTACATGTGAGCCAGGTCCACAAAAGTAGACACAGACCCTGAGACAATCCAGTCCACATGTTGTAAAGAatacctgaaaaaaaacaaaacaataaatattaatttttgtttaagCGGTGACCATCTACGAGCCAAACTATGCTGGTTTGGACTAATTTCATACTCATTAGTGGACAAAATGCAGAGTGAGGTGTGCAGGACTTGAGCTGTATCCAACCAAAAAACCAGGACAAACCTCAAGAAACTGCTAAATGCTAAGTAATGATCTTCCAGTTTAGCGCCTTCTTACACAGCCGTTTATTCAGCAGTTGGTACACAGATGCTTCCTCAGACGCTACTCAATTAGTGGCGCCTCCATGGACGAAGCGCTCGGCTAACTATGAAGGAGAGCCACCAAACAGACGTGCTCTTATTTATTATGCACATTTGTTTATTGCTAATGACTTGGAAAATGCTAATGACTTGGAGTAGTGGAGGTTATCTTGAAGGGCTCAGGCAAATTGGATTTTGAAAATAAGCACAACAAAGTAATAATTTGTCGTGGCTCTCTTTGCTGAGGAGAGTGGGCTGATTAATTACAAATGTTATtgttttacttctttttaaatttatgcttTATTCATTTGTCATGTTGTGTAACTTGGTATTAAGTTATCTCCATATTATGGAGTGGTTTCTATATATTGGAATAAACTGAAATGTAGGTCTTTTTTTACCCGATATTGTCAGTAAAACActgatgatatgatatttaataTGATTAAAATTGCACTTTATATGGGTCATTTTGTGGAAGAGAGTGTTTTATAAAGCAGGTGATCTCCTCGTCATGTATAATGTGCTTTCATTCAGAAACAGAGGTCTCATTCATGAAAGTGGTGCAGAGGTGACATTTACAGTTTCACTGTATCATTTATGTAACATCTGAAACCTACGTTTTTTCACTTAATCAGCTAAAGCATCTGCCTGTCTGAAAAGTGAATTCAGGATGTGGGATATGGGTGCAAGACGATCATTTGCAGTTGCTTTCTCTTTGCCTCGACCTTTATCTTGGTGTGAACTTTGGTCTGAGAATTTCCAAACCTCTGTATTGTGAGCCACTAGAACACAAAAGAATGAGAGTTTTGCATTTCTGTGTCGATTATCAGATGGTTCTATAATAAAGGCTTGGGGTAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386940 lncRNA downstream 67574 4192950 ~ 4194247 (-) True G326557
TU386871 lncRNA downstream 184853 4061916 ~ 4076968 (-) True G326488
TU386581 lncRNA downstream 259996 4001618 ~ 4001825 (-) True G326236
TU386580 lncRNA downstream 260306 3999109 ~ 4001515 (-) True G326235
TU386553 lncRNA downstream 302826 3957503 ~ 3958995 (-) False vsig10l
TU386960 lncRNA upstream 34824 4308637 ~ 4314756 (-) False LOC113532858
TU386991 lncRNA upstream 111262 4385075 ~ 4394774 (-) True G326597
TU386989 lncRNA upstream 117737 4391550 ~ 4394774 (-) False G326597
TU386990 lncRNA upstream 117737 4391550 ~ 4394774 (-) False G326597
XR_003403377.2 lncRNA upstream 134678 4408491 ~ 4411401 (-) True LOC113532978
XM_026924012.2 mRNA downstream 4849 4250942 ~ 4256972 (-) True LOC113532587
XM_026924694.2 mRNA downstream 16961 4242354 ~ 4244860 (-) True LOC113532948
XM_026924693.2 mRNA downstream 27834 4225960 ~ 4233987 (-) True LOC113532947
XM_026924691.2 mRNA downstream 39649 4217568 ~ 4222172 (-) True LOC113532945
XM_034298249.1 mRNA downstream 283142 3968848 ~ 3978679 (-) True etfb
XM_034297939.1 mRNA upstream 34793 4308606 ~ 4347253 (-) False LOC113532858
XM_034297938.1 mRNA upstream 34793 4308606 ~ 4347253 (-) True LOC113532858
XM_026924675.2 mRNA upstream 76905 4350718 ~ 4374894 (-) True ago1
XM_026924013.2 mRNA upstream 176537 4450350 ~ 4466446 (-) True si:ch211-107n13.1
XM_034297818.1 mRNA upstream 176537 4450350 ~ 4455607 (-) False si:ch211-107n13.1
TU386070 other downstream 1022674 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 2164386 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2811105 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2890792 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 3159704 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 689804 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 689804 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 1555661 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 1602283 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2156047 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile