RNA id: TU436478


Basic Information

Item Value
RNA id TU436478
length 266
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G368439
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19404498 ~ 19404763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatgagactgtaatgtgtagagatgagagactgtaatgtgtagagatgagactgtaatgtgtagagatgagactctgtaatgtgtagagatgagactctgtaatgtgtagagatgagactgtaatgtgtagagatgagactgtaatgtgtagagatgagactgtaatgtgtagagatgagactgtaatgtgtagagatgaggctgtaatgtgtagagatgagactgtaatgtgtagagatgagactgtaatgtgtagagatgagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436469 lncRNA downstream 9537 19388976 ~ 19394961 (-) True G368432
TU436437 lncRNA downstream 63528 19327355 ~ 19340970 (-) True G368406
TU436370 lncRNA downstream 95195 19308443 ~ 19309303 (-) False LOC113524312
TU436433 lncRNA downstream 99701 19304050 ~ 19304797 (-) True G368403
TU436408 lncRNA downstream 124650 19275825 ~ 19279848 (-) True G368388
TU436559 lncRNA upstream 71502 19476265 ~ 19539669 (-) True G368503
TU436574 lncRNA upstream 102925 19507688 ~ 19508501 (-) True G368517
TU436523 lncRNA upstream 116790 19521553 ~ 19554477 (-) True G368472
XM_026910441.2 mRNA downstream 83836 19316096 ~ 19320662 (-) True LOC113524267
XM_034299705.1 mRNA downstream 89183 19308835 ~ 19315315 (-) False LOC113524312
XM_026911845.2 mRNA upstream 145182 19549945 ~ 19556707 (-) True LOC113525355
XM_034299790.1 mRNA upstream 152314 19557077 ~ 19566528 (-) True LOC113525354
XM_026911844.2 mRNA upstream 152316 19557079 ~ 19566528 (-) False LOC113525354
XR_004577251.1 other downstream 89340 19297407 ~ 19315158 (-) False LOC113524312
TU436383 other downstream 181478 19213078 ~ 19223020 (-) True mfng
TU436324 other downstream 536447 18854477 ~ 18868051 (-) False si:ch211-246m6.5
TU436254 other downstream 675037 18701902 ~ 18729461 (-) False s100b
TU436580 other upstream 125124 19529887 ~ 19544880 (-) True G368523

Expression Profile