RNA id: XM_026910441.2


Basic Information

Item Value
RNA id XM_026910441.2
length 1234
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113524267
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19316096 ~ 19320662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acactctcctgctcATTCTCACCTGTAGACGTTAGACACAGAagtgtggacacacacacacacacacaccatggcgAGTGTTGGGATGCTGCCGAGTGGACTGGCAATCTGCTGCTCCCTCCCTGATATTCTCTTCCTACCTGAACTCgtGTTTGGAGGCTTGGTGTGGATTTTAGTTGCGTGTACGTACATCATTCCCAATAACCCTCAGGCGTACGTCATGGCCGTGTCGTTGTTCTGCTTCTGCCTGACCTTCATCTGGATGATGATGTTCCTCTGTGGAGCTCATCACAGCCGATCCTCCTGGGCTGCTGGAgacgtGCTGTATCACGGTTTAGCTGCTATGCTGTATCTCAGTGCTTCAGTCTTACTCGCCTTAGTCACCATTGGGATCGGTTATAACCTTTCACCAGATGGAGATGTACTAAAAATCTACAGACTGGACATCTCTGCTGTGGTGTTCTCCTTCATCGCCACACTGCTGTACACCATTCACACCATCTTCTCTGCCATCCGCTGGAAGGTTTTTTAAACCAAGATGTTTCAAataagtatgtgtgtatgtgcgtgtgtgtgtatgtgtgggtgtgtgtacgtgcgcctgtgtgtgcatgtgcgcgtgtgtgagtgtgtgtgtatgtgcgcgtgtgtgtgtgagtgtgtgtgtatgtgcgcgtgtgtgttccAGCCTGTCAGACATTAGTAAGTGTAATAATGGTTGTGTATTCACTCTGTTCCTGTAAAGGAGAaagctgatttttttgtctttactctGAGGATTTAATGCTGTCGCTCTgtaggtcagtgtgtgtttgaaactTTTTGATTAATGACAATTCACACTGAGAGAAAACTACAGAGatgaataaactttaaaaacGAGTGTGGCATTTATTTCATGTCTATTAAAAACTGTGTTTAAATGAGTCGCACCTTGATGACATCATATGAGACGCAGTGCTTCTCGTCCTCGTCCATCTTCTCTGCAGAAATCACACTAATTAACGAGTGTGACGAGGGTGCAGGATGGCCCTGATTTCTGATTGGATGgcatgtatttaataataataataataataatgataataataacaataataataataataatatgttaaaatgtcagttttttgAAGTAGAGCTACAGCTTGTGTGGGTTTTCTGCAGCCTTCAGTTTGACTGTTACAGGATTGTTTATGAAAAAGAACCTTaataaaaagatgaataaatccTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436376 lncRNA downstream 6793 19232627 ~ 19309303 (-) False LOC113524312
TU436370 lncRNA downstream 6793 19308443 ~ 19309303 (-) False LOC113524312
TU436433 lncRNA downstream 11299 19304050 ~ 19304797 (-) True G368403
TU436408 lncRNA downstream 36248 19275825 ~ 19279848 (-) True G368388
TU436416 lncRNA downstream 40906 19272195 ~ 19275190 (-) True G368391
TU436437 lncRNA upstream 6693 19327355 ~ 19340970 (-) True G368406
TU436469 lncRNA upstream 68314 19388976 ~ 19394961 (-) True G368432
TU436478 lncRNA upstream 83836 19404498 ~ 19404763 (-) True G368439
TU436559 lncRNA upstream 155603 19476265 ~ 19539669 (-) True G368503
TU436574 lncRNA upstream 187026 19507688 ~ 19508501 (-) True G368517
XM_034299709.1 mRNA downstream 638 19308835 ~ 19315458 (-) False LOC113524312
XM_034299708.1 mRNA downstream 729 19308835 ~ 19315367 (-) False LOC113524312
XM_034299705.1 mRNA downstream 781 19308835 ~ 19315315 (-) False LOC113524312
XM_034299707.1 mRNA downstream 938 19308835 ~ 19315158 (-) False LOC113524312
XM_034299706.1 mRNA downstream 946 19308835 ~ 19315150 (-) False LOC113524312
XM_026911845.2 mRNA upstream 229283 19549945 ~ 19556707 (-) True LOC113525355
XM_034299790.1 mRNA upstream 236415 19557077 ~ 19566528 (-) True LOC113525354
XM_026911844.2 mRNA upstream 236417 19557079 ~ 19566528 (-) False LOC113525354
XR_004577251.1 other downstream 938 19297407 ~ 19315158 (-) False LOC113524312
TU436383 other downstream 93076 19213078 ~ 19223020 (-) True mfng
TU436324 other downstream 448045 18854477 ~ 18868051 (-) False si:ch211-246m6.5
TU436254 other downstream 586635 18701902 ~ 18729461 (-) False s100b
TU436255 other downstream 611008 18701902 ~ 18705088 (-) True s100b
TU436580 other upstream 209225 19529887 ~ 19544880 (-) True G368523

Expression Profile